|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G15360 | AT | Annotation by Michelle Graham. TAIR10: thioredoxin M-type 4 | chr3:5188448-5189457 FORWARD LENGTH=193 | SoyBase | E_val: 1.00E-61 | ISS |
GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
GO:0006109 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of carbohydrate metabolic process | SoyBase | N/A | ISS |
GO:0006569 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process | SoyBase | N/A | ISS |
GO:0006662 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycerol ether metabolic process | SoyBase | N/A | ISS |
GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
GO:0009684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process | SoyBase | N/A | ISS |
GO:0009853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photorespiration | SoyBase | N/A | ISS |
GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
GO:0043085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity | SoyBase | N/A | ISS |
GO:0043086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of catalytic activity | SoyBase | N/A | ISS |
GO:0045454 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis | SoyBase | N/A | ISS |
GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
GO:0004857 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity | SoyBase | N/A | ISS |
GO:0008047 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
GO:0015035 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity | SoyBase | N/A | ISS |
KOG0910 | KOG | Thioredoxin-like protein | JGI | ISS | |
PTHR10438 | Panther | THIOREDOXIN-RELATED | JGI | ISS | |
PTHR10438:SF82 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
PF00085 | PFAM | Thioredoxin | JGI | ISS | |
UniRef100_A7LNX7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Thioredoxin n=1 Tax=Limonium bicolor RepID=A7LNX7_9CARY | SoyBase | E_val: 1.00E-71 | ISS |
UniRef100_I1KDX9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDX9_SOYBN | SoyBase | E_val: 7.00E-119 | ISS |
Glyma06g37970 not represented in the dataset |
Glyma06g37970 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.06g245200 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g37970.1 sequence type=CDS gene model=Glyma06g37970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAACACTCTTCGACTCTCTCGCCGTCGTGCGTCTCCCCACCGCCGCCCGCCGGACCTCCGTTATGCTCCCGCACTGCGCTGGCCTCAGGCTCAGACCCGCCGCCGCTTCGCGCCTAGTTGCGTCCCCCGCTCGCAGGATCGCTTCTCGCGCAGCGCGCGTCGCCTGCGAGGCTCAGGACACCGCCGTGGAAGTGGCTCCTATTACTGATGCAAACTGGCAATCCCTTGTCCTTGAATCCGAATCTGCTGTTTTGGTTGAATTCTGGGCGCCATGGTGTGGTCCCTGCCGAATGATTCACCCTATAATTGATGAACTTGCAAAGCAATATGCTGGGAAGCTCAAGTGTTACAAACTCAACACTGATGAGAGCCCTTCAACCGCTACTCGGTATGGAATTCGAAGCATCCCAACTGTTATGATCTTCAAGAGTGGTGAGAAGAAAGATACAGTTATTGGTGCTGTGCCCAAGTCAACATTGACCACGAGCATAGAAAAATTCGTATGA
>Glyma06g37970.1 sequence type=predicted peptide gene model=Glyma06g37970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATLFDSLAVVRLPTAARRTSVMLPHCAGLRLRPAAASRLVASPARRIASRAARVACEAQDTAVEVAPITDANWQSLVLESESAVLVEFWAPWCGPCRMIHPIIDELAKQYAGKLKCYKLNTDESPSTATRYGIRSIPTVMIFKSGEKKDTVIGAVPKSTLTTSIEKFV*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||