SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G53000 | AT | Annotation by Michelle Graham. TAIR10: Nucleotide-diphospho-sugar transferases superfamily protein | chr1:19745330-19747133 REVERSE LENGTH=290 | SoyBase | E_val: 5.00E-173 | ISS |
| GO:0009103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipopolysaccharide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0033468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0031307 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to mitochondrial outer membrane | SoyBase | N/A | ISS |
| GO:0008690 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-deoxy-manno-octulosonate cytidylyltransferase activity | SoyBase | N/A | ISS |
| GO:0016779 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity | SoyBase | N/A | ISS |
| PTHR21485 | Panther | CMP-N-ACETYLNEURAMINIC ACID SYNTHASE | JGI | ISS | |
| PTHR21485:SF4 | Panther | CMP-2-KETO-3-DEOCTULOSONATE (CMP-KDO) CYTIDYLTRANSFERASE | JGI | ISS | |
| PF02348 | PFAM | Cytidylyltransferase | JGI | ISS | |
| UniRef100_B9RU62 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cmp-2-keto-3-deoctulosonate (Cmp-kdo) cytidyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RU62_RICCO | SoyBase | E_val: 1.00E-180 | ISS |
| UniRef100_I1LT34 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LT34_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g37960 not represented in the dataset |
Glyma06g37960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g245100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g37960.2 sequence type=CDS gene model=Glyma06g37960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAATTTGTTCCTCACCATCATCGTCATCGTCATCTTCTTCTTCTACGTCGTCGTTTGGTTCCTCGAACACCGCGAAGGCGTGGATAATCCATGGCATTGTGGCCGGAGTGGCGATTGCTGCGGCGGTGGGCGCACGCGCTTACATGACCCGATTCAGCAAGTTTCGGAGCCGGGTCGTGGGCATCATACCCGCCCGATTCGCTTCCTCGCGCTTTGAGGGAAAGCCTCTCGTTCAAATCCTGGGCAAGCCCATGATCCAGAGAACATGGGAAAGGGCAAAGCTGGCAGCTACATTAGATCATGTTGTTGTGGCAACTGATGATGAAAAGATTGCTGACTGCTGTAGACAATTTGGAGCTGATGTTATAATGACCTCAGAATCTTGCAGAAATGGTACTGAGCGCTGCAATGAAGCCCTACAGAAACTTGGGAAAAAATATGATATTGTTGTCAACATTCAGGGTGATGAGCCACTTATTGAACCTGAGATAATCGATGGTGTTGTGAAAGCTTTGCAGGCAGCTCCAGATGCAGTGTTCAGCACAGCAGTCACATCTTTGAAGCCTGAAGATGCCCATGATCCAAATAGAGTGAAATGTGTGGTAGATAACCGTGGTTATGCCATTTACTTTTCACGAGGATTAATCCCATTCAACAAGTCAGGGAAGGTCAATCAACAGTTCCCGTATTTGCTTCATCTTGGGATTCAGAGCTATGATGCAAAGTTTTTGAATATATACCCTAATCTTCGACCTACTCCTTTGCAACTTGAGGAGGATTTGGAGCAGCTTAAAGTCCTTGAGAATGGCTACAAGATGAAGGTGATAAAAGTTCATCATGAGGCTCATGGTGTTGACACTCCTGAAGATGTTGGAAAGATAGAATCTCTAATGCGTGAGAGGAACTTATCTTGA
>Glyma06g37960.2 sequence type=predicted peptide gene model=Glyma06g37960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAICSSPSSSSSSSSSTSSFGSSNTAKAWIIHGIVAGVAIAAAVGARAYMTRFSKFRSRVVGIIPARFASSRFEGKPLVQILGKPMIQRTWERAKLAATLDHVVVATDDEKIADCCRQFGADVIMTSESCRNGTERCNEALQKLGKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAHDPNRVKCVVDNRGYAIYFSRGLIPFNKSGKVNQQFPYLLHLGIQSYDAKFLNIYPNLRPTPLQLEEDLEQLKVLENGYKMKVIKVHHEAHGVDTPEDVGKIESLMRERNLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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