SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G32180 | AT | Annotation by Michelle Graham. TAIR10: pantothenate kinase 2 | chr4:15538340-15543715 REVERSE LENGTH=783 | SoyBase | E_val: 8.00E-54 | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0015937 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coenzyme A biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004594 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pantothenate kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| PF01937 | PFAM | Protein of unknown function DUF89 | JGI | ISS | |
| UniRef100_B9RB16 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pantothenate kinase, putative n=1 Tax=Ricinus communis RepID=B9RB16_RICCO | SoyBase | E_val: 8.00E-53 | ISS |
| UniRef100_UPI000233E80A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E80A related cluster n=1 Tax=unknown RepID=UPI000233E80A | SoyBase | E_val: 2.00E-58 | ISS |
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Glyma06g37950 not represented in the dataset |
Glyma06g37950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g245000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g37950.1 sequence type=CDS gene model=Glyma06g37950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTGCTGATGGGAAAGTTCCTAAAACTAGACCCCAGTGGCTTGAACTGAAGGATTATGTCTTTGCAGGTGCTATCTTCATGTATAAGAGGTCGCAAACATACAGTAGTTACTGCAGAGACCATCAAGGTAGAACATTTAAGTGCTTAAAAGTACTTGTGCTCTTGATGGAAATGAATTATATGCTAGCATATGGTTCCGGGGAAGCTTCTTTGAGGCTATTATGGAATTCCGGTAGCCTACATATACTTCTCCCCTTTGAGGTAGATATTGATTTTGCATTTAATTTCATTGCAATTTATGCAACAACAATACCTTTATCTCCCTTGTTGTACTTTGTTAGCCATATCCATGAGATAAACATAATTGTAATGCCTTCAGTAAACATAACAGGCCGGGATGATCAACAAATGAGAGACAGAGAGAGAATGAGTCAGCGTGTCTTTTTAAGGAATGAATCTTTTTGTGGTAAGTTATACAGGTGGCAATTGGAGTATTGGTATTTGGCAGTGACTAGTGGAAATGGCAATTGTTGGACAGAGATATTTTTCTTCCCACATACGATGGAAAAATGGCCTAAGTGGTTGAGGGCCACCGCAGGTCTCTTCTTGACAAACCTACCTGAAAATCCAAATCTTCTTCTCAGAGTAGGCATGAAAACCTGGATTTTTTTTATATTTATATTTTATCTAAATGGACTAGCAAAAGGTTTAGTTCAAGATAGAAACCAATGGTGTCTTTTGATTTATTTCATGTCATCTCTAGACCTATATTATCCTCATAATGTCCTTATTCTTGATCACTTAAATTTTTTATTTAGGGAAAATGAGGCATCACTTGTTGTCCTACCTGATTTGTTGATGGAGCTTGATAGTATGGATGAGGAAACAACACTACTTACTCTCATTGAAGGTGTTCTTGCTGCAAACATTTTTTATTGGGGATCTCGTGCATGTGTGGATCTCTATCATAAAGGTACTATTATTGAAATTTACAAAATGAGTCGCAACAAAATGCAGAGACCTTGGCAAGTGGATGATTTTGATGCCTTTAAACAAAGAATGTTAGGAACAGGGGACAAGAAACCACCCCCACATAGAAGAGCTTTACTTTTTGTGGACAATGCAAGTGCTGACACAATTTGGATTTTGTTGTGTGACAAAAGTTACCTGTTAAATATAATTATGTTAATTGTTAATATAAATAAGTTACCTGATAAATCTAATTATGTTTATTCTTATTATAAAAAAAAAAAATTAATCTACATCGGTGCTTACGACAGCAACGACGTAGTTGGACATGCATTCAACGGCGGTGGTTGCGGATGCAACGACATAATAAAGGTGTCGTCAAAGCCCTACCTTAAAAGCGTATGTTTCAACATCGTTGCTGACGTCGACAACGTCTTCGAAGGCGAAGCTTCAACTACAACTGTGACGTCAGTCCCGTCGCCGGAATCACGTCCTTCTAAAACTGTGCTTAGTGACCGTCGTAGATTGATGTTCTTCGACGCTGCAAAAACACACGTGTCTTCTTTTGATTGCTGA
>Glyma06g37950.1 sequence type=predicted peptide gene model=Glyma06g37950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTADGKVPKTRPQWLELKDYVFAGAIFMYKRSQTYSSYCRDHQGRTFKCLKVLVLLMEMNYMLAYGSGEASLRLLWNSGSLHILLPFEVDIDFAFNFIAIYATTIPLSPLLYFVSHIHEINIIVMPSVNITGRDDQQMRDRERMSQRVFLRNESFCGKLYRWQLEYWYLAVTSGNGNCWTEIFFFPHTMEKWPKWLRATAGLFLTNLPENPNLLLRVGMKTWIFFIFIFYLNGLAKGLVQDRNQWCLLIYFMSSLDLYYPHNVLILDHLNFLFRENEASLVVLPDLLMELDSMDEETTLLTLIEGVLAANIFYWGSRACVDLYHKGTIIEIYKMSRNKMQRPWQVDDFDAFKQRMLGTGDKKPPPHRRALLFVDNASADTIWILLCDKSYLLNIIMLIVNINKLPDKSNYVYSYYKKKKLIYIGAYDSNDVVGHAFNGGGCGCNDIIKVSSKPYLKSVCFNIVADVDNVFEGEASTTTVTSVPSPESRPSKTVLSDRRRLMFFDAAKTHVSSFDC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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