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Report for Sequence Feature Glyma06g37845

Feature Type:gene_model
Chromosome:Gm06
Start:40481204
stop:40481728
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G22910AT Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:8105808-8107618 FORWARD LENGTH=242 SoyBaseE_val: 6.00E-38ISS
GO:0000398GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
PTHR24011Panther FAMILY NOT NAMED JGI ISS
PTHR24011:SF26Panther SUBFAMILY NOT NAMED JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_B9R8Y3UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding region-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R8Y3_RICCO SoyBaseE_val: 5.00E-42ISS
UniRef100_I1L5T4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5T4_SOYBN SoyBaseE_val: 1.00E-43ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g37845 not represented in the dataset

Glyma06g37845 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma06g37845.1   sequence type=CDS   gene model=Glyma06g37845   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTAGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATGTAAAGGCTATGGATTTGTTACTTTTCGTGAACCAGAAGCTTCCATGAGAGCTTGTGTGGATCCTGCTCCTATAATCAACGGTAGGAGCGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAACATGCTAATCTATAA

>Glyma06g37845.1   sequence type=predicted peptide   gene model=Glyma06g37845   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKYFEQFGEILEAVVITDKATGRCKGYGFVTFREPEASMRACVDPAPIINGRSANCNLASLGVQRSKPSTPKHANL*







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