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Report for Sequence Feature Glyma06g37230

Feature Type:gene_model
Chromosome:Gm06
Start:39698896
stop:39700837
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g37230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53035AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15358.1); Has 49 Blast hits to 49 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19761866-19762318 REVERSE LENGTH=150 SoyBaseE_val: 1.00E-67ISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1KDW3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDW3_SOYBN SoyBaseE_val: 9.00E-100ISS

Expression Patterns of Glyma06g37230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g37230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g242700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g37230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g37230
>Glyma06g37230.2   sequence type=transcript   gene model=Glyma06g37230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACTACAGTCATGTAGACCCATTTTCCATGACCCAGAAGTACCATAATACCATTCTTTCAATTGCTTACCAGACCAAGCATGGAAGCTACCGGGGAAAAAGCATGGCATTTTCTGCATGTGGTTCGGAATATGGAAGCAAATTCTATGCTATTTAATTATGGCATAACAACCACCTTGTGTCTTCATTAATTCCTATGCAAATCTCCAACCTAGAAGATTAACCATGTCCCTTTCTCTAACTTGTGGAGCTTTGATGATATTCTACTCCAAAGAGATCTCTGTGCTAGGCCATGGATCTGAGACCGCTAGCAAGCTTCAAGGGACAACACCCCATGATCAGCTTCTGATTGACACCTCTGATTCCTTCTCTGGATTGTTGTTGTTCACAATAGGGTTCCTTCTGTTGATGGTTGCTTTTGTTAAGGACAGAGAATTTCAGAGTTTCTTTGCCAAAGGGTGTGTGATGCTTCACATCTCCATGGCAGTGTGGAGATTCTTCTTTGAGAGGAAGCTTGGGGATCTTGCACATGAGTGGCCTAGGCATGCTGTTGGGGACATTGCATTGGCCATTTCATGGGTCTTCTTTCTTGTGTACACATGGAGAGAGAAATATGATTAGTTAATTTATTTATTTATTTTTAGCAAAGTTATGGTGCTTGTGGTTGTGGAAACAACATGGCTTCAAGAAAGGTCAATTGTTTTGTTTTAGTTGGAAGGAACCAATATTTTCAGGGTTGTTTGGGCATTTCAAAAGGGACAAATTGAGCTCAAATTGGCCTTGTGAATGCTCAAATTCTTGACATAAATGGAGAACCATTACATGAGTTCTGGTCTTCTTCAAAGAGAGAATGGAAGAGCTTGTTGAGTCAACTTTCTGGTTCTGAGGTGCACAGATTCATTATTTAGAATCTGGGTTGGAAACTTTTCCTTGATTGCTTCAATTTCAATGGGGGAGCTCCAGTAATTTGTGAAAACTTCATTTTTCTAGTGAGTCCTTAAAAAAATGTACCAGCTTTTTACCCCCCCTTTCTGGCTTCAATTGTGAAAGTTCTGAATTTATATTTTTCCTGTTTTGCATCCATAACATTGGTGCAGGTATGTCTATTTAGGATTTGGCATATTGCTGAGTCCAATCACTAGGGAGGGTGGCATCCTTATGTTGAGAAAAATACCTTTTCAAATTGAGTGAGGATAGCAAGGAATTTTTCCCTCTTGGTTCAACTTCAAGCCATGTCTTTCAGGATGCTGATTTGTTCTTTTTCTAGTTGTTTTCTCTTTTCTTTTATCTAAAGTAGATGCTCTCATTTAACACAATCGCCAATTTTGTTGTAATTTGTTAGTGTTGTAAAGAATAAAGGTCCTTACTTTTGAAGTCACACCTGA
Coding sequences of Glyma06g37230
>Glyma06g37230.1   sequence type=CDS   gene model=Glyma06g37230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCTTCTGTGTTTACCCTTATGTGTGTTCTTCATTCTACAATAGCTCTAACTTGTGGAGCTTTGATGATATTCTACTCCAAAGAGATCTCTGTGCTAGGCCATGGATCTGAGACCGCTAGCAAGCTTCAAGGGACAACACCCCATGATCAGCTTCTGATTGACACCTCTGATTCCTTCTCTGGATTGTTGTTGTTCACAATAGGGTTCCTTCTGTTGATGGTTGCTTTTGTTAAGGACAGAGAATTTCAGAGTTTCTTTGCCAAAGGGTGTGTGATGCTTCACATCTCCATGGCAGTGTGGAGATTCTTCTTTGAGAGGAAGCTTGGGGATCTTGCACATGAGTGGCCTAGGCATGCTGTTGGGGACATTGCATTGGCCATTTCATGGGTCTTCTTTCTTGTGTACACATGGAGAGAGAAATATGATTAG

>Glyma06g37230.2   sequence type=CDS   gene model=Glyma06g37230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCCTTTCTCTAACTTGTGGAGCTTTGATGATATTCTACTCCAAAGAGATCTCTGTGCTAGGCCATGGATCTGAGACCGCTAGCAAGCTTCAAGGGACAACACCCCATGATCAGCTTCTGATTGACACCTCTGATTCCTTCTCTGGATTGTTGTTGTTCACAATAGGGTTCCTTCTGTTGATGGTTGCTTTTGTTAAGGACAGAGAATTTCAGAGTTTCTTTGCCAAAGGGTGTGTGATGCTTCACATCTCCATGGCAGTGTGGAGATTCTTCTTTGAGAGGAAGCTTGGGGATCTTGCACATGAGTGGCCTAGGCATGCTGTTGGGGACATTGCATTGGCCATTTCATGGGTCTTCTTTCTTGTGTACACATGGAGAGAGAAATATGATTAG
Predicted protein sequences of Glyma06g37230
>Glyma06g37230.1   sequence type=predicted peptide   gene model=Glyma06g37230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSSVFTLMCVLHSTIALTCGALMIFYSKEISVLGHGSETASKLQGTTPHDQLLIDTSDSFSGLLLFTIGFLLLMVAFVKDREFQSFFAKGCVMLHISMAVWRFFFERKLGDLAHEWPRHAVGDIALAISWVFFLVYTWREKYD*

>Glyma06g37230.2   sequence type=predicted peptide   gene model=Glyma06g37230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLSLTCGALMIFYSKEISVLGHGSETASKLQGTTPHDQLLIDTSDSFSGLLLFTIGFLLLMVAFVKDREFQSFFAKGCVMLHISMAVWRFFFERKLGDLAHEWPRHAVGDIALAISWVFFLVYTWREKYD*






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