Glyma06g37200 - SoyBase

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Report for Sequence Feature Glyma06g37200

Feature Type:	gene_model
Chromosome:	Gm06
Start:	39621398
stop:	39623860
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g37200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G03390	AT	Annotation by Michelle Graham. TAIR10: STRUBBELIG-receptor family 3 \| chr4:1490912-1494553 REVERSE LENGTH=776	SoyBase	E_val: 7.00E-63	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF889	Panther		JGI		ISS
UniRef100_I1KF51	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KF51_SOYBN	SoyBase	E_val: 6.00E-86	ISS
UniRef100_Q6R2K3-2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isoform 2 of Protein STRUBBELIG-RECEPTOR FAMILY 3 n=1 Tax=Arabidopsis thaliana RepID=Q6R2K3-2	SoyBase	E_val: 3.00E-64	ISS

Expression Patterns of Glyma06g37200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g37200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma06g37200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g37200

Limit To All Plant Sequences

>Glyma06g37200.1   sequence type=CDS   gene model=Glyma06g37200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGCTGCAATTAATAGCTTATATATTGCACTACGATCCCCTGTTCTTCCTAGATGGGTTGCTAGTGGCGGAGATCCATGTGGAGAAGGGTGGCAAGGCATTCTGTGCAATGGATCATTCATACAAAAAATTAATGTAAATAGAATTCTCTCTCTCTCTGCATTTATCCGTGTGCATATGCATGAACATGTGTATGTTTGTGTATTTATAGCATTTTCCTCAGTTCATGAATTTAGTGATCTAAGCAACAACAACATTGGAGGAAATATTCCATCCAGTTTGCCAGTTGCCTTGAGAAAACTTGTACGTAATAACCTAACTCTTTTTCTTGCAGCTAACCAGTTCACTAGAAGTATTCCGACCTCTTTATCCACTTTGATTGGACTGACAGACATGTCTTTTAATGAGAACTTTTTAACTGGAGAAATACCAGATGCTTTTCAACATTTATCTCATAATAATTTGAGTGGGGAATTGCCTCCTTCTATGGATAACTTGTCGCCTCTGACCACCCTGTTAAACAATCAACTTTTTGGGACACTTGATATTTTGCAAGACCTTCCTCTGAAATATTTGAATGTTGAGAACAACCAGTTTGCTGGCCCAATACCTCCAAAGTTGCTAAGCATCCCTGCCTTCAGAAAATGTGAAAATGGATATGGAAAATCAAAGCTTGAAATTTTATCTGATCCTTTGATTCTGGCCCTATTAAATGACATAAGGTGTGAACTTTGTACAGACTTAAGGTGGAGTTTTGGATTATTTTATGTGACTGAGTTCAGGTTGAGTTTTTGGTTATCTTATATGGCTATCTTTTTTTCTGTGACTATTGAGAAAATTGAAAGCATGATCAAAAGGCTTCTAATCTATGAGTACTACAGTAATCATTGTATGATGCACTCCACTCAGATGATGACTTCAAAACAAGACTCTCATGGAATTCTC

Predicted protein sequences of Glyma06g37200

Limit To All Plant Sequences

>Glyma06g37200.1   sequence type=predicted peptide   gene model=Glyma06g37200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VAAINSLYIALRSPVLPRWVASGGDPCGEGWQGILCNGSFIQKINVNRILSLSAFIRVHMHEHVYVCVFIAFSSVHEFSDLSNNNIGGNIPSSLPVALRKLVRNNLTLFLAANQFTRSIPTSLSTLIGLTDMSFNENFLTGEIPDAFQHLSHNNLSGELPPSMDNLSPLTTLLNNQLFGTLDILQDLPLKYLNVENNQFAGPIPPKLLSIPAFRKCENGYGKSKLEILSDPLILALLNDIRCELCTDLRWSFGLFYVTEFRLSFWLSYMAIFFSVTIEKIESMIKRLLIYEYYSNHCMMHSTQMMTSKQDSHGIL

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