SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G27325 | AT | Annotation by Michelle Graham. TAIR10: hydrolases, acting on ester bonds | chr3:10096224-10102087 FORWARD LENGTH=1085 | SoyBase | E_val: 3.00E-141 | ISS |
| GO:0006505 | GO-bp | Annotation by Michelle Graham. GO Biological Process: GPI anchor metabolic process | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0031227 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intrinsic to endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0016788 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds | SoyBase | N/A | ISS |
| PTHR15495 | Panther | NEGATIVE REGULATOR OF VESICLE FORMATION-RELATED | JGI | ISS | |
| PTHR15495:SF7 | Panther | gb def: sd04405p [drosophila melanogaster] | JGI | ISS | |
| PF07819 | PFAM | PGAP1-like protein | JGI | ISS | |
| UniRef100_A2Q4M6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Esterase/lipase/thioesterase; Lipase, active site n=1 Tax=Medicago truncatula RepID=A2Q4M6_MEDTR | SoyBase | E_val: 3.00E-164 | ISS |
| UniRef100_I1N7K0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7K0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g37125 not represented in the dataset |
Glyma06g37125 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g242300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g37125.1 sequence type=CDS gene model=Glyma06g37125 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAAATGCCTTTTACGATGCACATTCTAAGATGATTATTGAAAACTATCTTAGAATGTTATGTCTAATAAAATTTACGACAGGTTTGTACTTGTACCATGAGGGGTGGAAAAAGATAGATTATAAGAAGCATCTTAAGAAGCTTAGTGGTGTGCCCGTGCTTTTCATCCTAGGCAATGGTGTTATATTATATAGTATGATGACATGTAAACATAAATATGCATATCTAGTTTGCTTTTTTCAAAGTTTGAGGTATGCTCACTTGCTGGCCAAGGTGCGATCATTGGCAGCAGAATCTGATCGGGCATATCAGAATGGCCCCCTTGAGCGTACATTTTACCAAGAAGCTTCCCTAAGACCTGAAGAAGAAGATGTAGATATAAATTTATCTAGTTTCCAATTGCCCAGCCAGTACACCAGCAGGTTGGACTGGTTTGCTTTCAATCTTGAAGGTGAACATTCTGCCATGGATGGTGCGATTCTGGAAGAGCACACTGAATATGTTGTATATGCTATACACAAGATTTGGGACCAATATAAAGTTTCTTATGACGCTGGAACAAGAGAAAGTGTTGCAGTTTCTGGGAGTTTGCCAAAAAGTGTGATATTAGTTGGTCATTCAATGGGAGGTTTTGTTGCTAAGGCTGCTATTATCCACCCTCGTCTTAGGAAATCAGCTGTTGAAACTGTTCTTACACTTTCAACCCCACATCAATATGTTTATTTCCAATTATCACCTCCTGTGGCATTGCAGGCTTCATTGGGTCATTACTTTGCACGTGCAAATTCAGAATGGATAAAAGGATATAAGGTTCAAACCACTAACACGGGACATTATGTGTCTGATCCAGTACTCTCTCATGTTGTAGTTGTATCTATTTCTAGTGCATACAATGATTATCAGGTACGGTCAAAATTAACATCACCTGATAATATTGTGCCCCCAACCCATGGCTTCATGATCAGTAGTACAGCCATGAAAAATGTGTGGTTGTCTATGGAACATCAGGCTATTTTATGGTGTAATCAATTGGTTGTCCAAGTATCACACACTTCTTAG
>Glyma06g37125.1 sequence type=predicted peptide gene model=Glyma06g37125 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKNAFYDAHSKMIIENYLRMLCLIKFTTGLYLYHEGWKKIDYKKHLKKLSGVPVLFILGNGVILYSMMTCKHKYAYLVCFFQSLRYAHLLAKVRSLAAESDRAYQNGPLERTFYQEASLRPEEEDVDINLSSFQLPSQYTSRLDWFAFNLEGEHSAMDGAILEEHTEYVVYAIHKIWDQYKVSYDAGTRESVAVSGSLPKSVILVGHSMGGFVAKAAIIHPRLRKSAVETVLTLSTPHQYVYFQLSPPVALQASLGHYFARANSEWIKGYKVQTTNTGHYVSDPVLSHVVVVSISSAYNDYQVRSKLTSPDNIVPPTHGFMISSTAMKNVWLSMEHQAILWCNQLVVQVSHTS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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