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Report for Sequence Feature Glyma06g36940

Feature Type:gene_model
Chromosome:Gm06
Start:39266453
stop:39267866
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g36940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G11080AT Annotation by Michelle Graham. TAIR10: HMG (high mobility group) box protein | chr4:6760898-6763272 REVERSE LENGTH=446 SoyBaseE_val: 2.00E-66ISS
GO:0000793GO-cc Annotation by Michelle Graham. GO Cellular Compartment: condensed chromosome SoyBaseN/AISS
GO:0000794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: condensed nuclear chromosome SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
KOG0381 KOG HMG box-containing protein JGI ISS
PTHR13711Panther SWI/SNF-RELATED CHROMATIN BINDING PROTEIN JGI ISS
PF00505PFAM HMG (high mobility group) box JGI ISS
UniRef100_B9GXG3UniRef Annotation by Michelle Graham. Most informative UniRef hit: High mobility group family n=1 Tax=Populus trichocarpa RepID=B9GXG3_POPTR SoyBaseE_val: 3.00E-72ISS
UniRef100_I1KDV6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KDV6_SOYBN SoyBaseE_val: 4.00E-163ISS

Expression Patterns of Glyma06g36940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g36940 not represented in the dataset
Glyma06g36940 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g36940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma06g36940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g36940
>Glyma06g36940.1   sequence type=CDS   gene model=Glyma06g36940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCTTGTATTTTTTCAAGTAAAAATATTTCTGGCTACCTTACTGCAGAAGATTGTTACTGCAGAAGAGAAGATGCCTTATGAGGGGATATACCATGCGGGGAAAGAAGCTTATTTGCAGGTGATTGCAATGGAAAAACGTGAAACTGACTCAATGAGGTTCTTGGAAGACGAGCAGAAGCAGAGGACTGCAATGGAATTGTTTGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAGAAAGAGAAGGATCCATTAAAACCAAAGCACCCCATGTCAGCTTATTTGTTGTTCACTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAATAATTTGTTGGAGGTTCCAAAAATCACATCCAAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCATATGAAGAGATGGCAAAGAAAAATAAGGAGCAATATGCCTTACAAATGGAGGCTTATAAACAGAAGAAAGATGAGGAGGCTGGCCATTTCATGAAGGAAGAGGAGGACCATATGAAACTTCAAAAACAACAAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGCATTTAACAATCTGGATGTATGCAAAACAAACTAAGAAAAGGGACAAGGAAATCAAATCCCAAAACAAAACAGCAACAAGTGACTTTTAA
Predicted protein sequences of Glyma06g36940
>Glyma06g36940.1   sequence type=predicted peptide   gene model=Glyma06g36940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FLVFFQVKIFLATLLQKIVTAEEKMPYEGIYHAGKEAYLQVIAMEKRETDSMRFLEDEQKQRTAMELFEQYMQFKQEAEKDGKKNKKEKDPLKPKHPMSAYLLFTNDRRAALAAENNNLLEVPKITSKEWKNMTEEQKRPYEEMAKKNKEQYALQMEAYKQKKDEEAGHFMKEEEDHMKLQKQQALQLLKKKEKTENIIKHLTIWMYAKQTKKRDKEIKSQNKTATSDF*






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