Glyma06g36690 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g36690

Feature Type:	gene_model
Chromosome:	Gm06
Start:	39035298
stop:	39042146
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g36690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16710	AT	Annotation by Michelle Graham. TAIR10: glycosyltransferase family protein 28 \| chr4:9398818-9399618 FORWARD LENGTH=176	SoyBase	E_val: 3.00E-87	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0030259	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid glycosylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
KOG3349	KOG	Predicted glycosyltransferase	JGI		ISS
PTHR12867	Panther	GLYCOSYL TRANSFERASE-RELATED	JGI		ISS
PF04101	PFAM	Glycosyltransferase family 28 C-terminal domain	JGI		ISS
UniRef100_G7JC52	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-N-acetylglucosamine transferase subunit ALG13-like protein n=1 Tax=Medicago truncatula RepID=G7JC52_MEDTR	SoyBase	E_val: 2.00E-104	ISS
UniRef100_I1KDU9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDU9_SOYBN	SoyBase	E_val: 2.00E-127	ISS

Expression Patterns of Glyma06g36690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g36690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g240600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g36690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g36690

Limit To All Plant Sequences

>Glyma06g36690.4   sequence type=transcript   gene model=Glyma06g36690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCCAATTTGGGAGCCGCTATAGATCGGCTTCACACACGGCGGCGCTCCGATTCTCCGACACACTGTCGCTCACCGCTTCACTCTCTCACAAATTGACCGAATCATCTTGCTGTCTCTGGTGTCACTACAAGGGAGGGAAGACTATAATTGAATTGAATCGAGTGGGTGTTGCTAAATGGGGAACGATGAAGGCAATGATAAGAAAAAGAGAGTGGTTTTTGTGACTGTAGGGACAACCTGTTTCGATGCTCTTGTGAGAGCTGTGGATTCCAACAATGTTAAACAAGCCTTGTTTGCAAAAGGCTACACCCACCTTCTCATCCAAATGGGTCGTGGATCCTATCTTCCTACTAAGTCTGAAGGAGATGGTTCTTTGGCTGTAGACTACTTCACTTTTTCATCCAGTATTGCAGATCATCTCAGATCAGCTTCTCTTGTCATTAGCCATGCAGGGTCGGGTAGCATATTTGAGACATTGCAGCTGGGCAAACCTTTAATTGTGGTTGTAAATGAAGATTTGATGGATAATCATCAAAGTGAGTTAGCAGAAGAACTTGCTGATAGAAAACATCTGTATTGTGCTAGTCCTCAAACACTCCATCAAACTATAGCAAATATGGATTTAAGTTCTCTCTTTCCTTACTCTCCAGGTGATGCTACACCAGTGGCCAAGCATATAAACAATCTCCTTGGTTTTCCTGATGATTGATCTAAAGCCTTTTTCTCCCCTCTATCTCTAGGGTTAAAAGTCTTTGTGAGGGATGATAATCATTTTATGTAATATTTGGATCCCCTAAATATTCAGTCTTAAATGTTGAATTGAATATCATGTCGATGCAAGCAATATATATACAGGATTAAAAAAAAACGTTTTTGAGATT

>Glyma06g36690.5   sequence type=transcript   gene model=Glyma06g36690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAAAAAAAAAAAATACCCCCAGTAAATTGGGCTGCACCAGTTAACTGAAACATTGAGCATTTCGAAATCCCCATAGCTTCACCGCCAATTTGGGAGCCGCTATAGATCGGCTTCACACACGGCGGCGCTCCGATTCTCCGACACACTGTCGCTCACCGCTTCACTCTCTCACAAATTGACCGAATCATCGCTAGTTGCTGTCTCTGGTGTCACTACAAGGGAGGGAAGACTATAATTGAATTGAATCGAGTGGGTGTTGCTAAATGGGGAACGATGAAGGCAATGATAAGAAAAAGAGAGTGGTTTTTGTGACTGTAGGGACAACCTGTTTCGATGCTCTTGTGAGAGCTGTGGATTCCAACAATGTTAAACAAGCCTTGTTTGCAAAAGGCTACACCCACCTTCTCATCCAAATGGGTCGTGGATCCTATCTTCCTACTAAGTCTGAAGGAGATGGTTCTTTGGCTGTAGACTACTTCACTTTTTCATCCAGTATTGCAGATCATCTCAGATCAGCTTCTCTTGTCATTAGCCATGCAGGGTCGGGTAGCATATTTGAGACATTGCAGCTGGGCAAACCTTTAATTGTGGTTGTAAATGAAGATTTGATGGATAATCATCAAAGTGAGTTAGCAGAAGAACTTGCTGATAGAAAACATCTGTATTGTGCTAGTCCTCAAACACTCCATCAAACTATAGCAAATATGGATTTAAGTTCTCTCTTTCCTTACTCTCCAGGTGATGCTACACCAGTGGCCAAGCATATAAACAATCTCCTTGGTTTTCCTGATGATTGATCTAAAGCCTTTTTCTCCCCTCTATCTCTAGGGTTAAAAGTCTTTGTGAGGGATGATAATCATTTTATGTAATATTTGGATCCCCTAAATATTCAGTCTTAAATGTTGAATTGAATATCATGTCGATGCAAGCAATATATATACAGGATTAAAAAAAAACGTTTTTGAGATTAAAAATT

Coding sequences of Glyma06g36690

Limit To All Plant Sequences

>Glyma06g36690.2   sequence type=CDS   gene model=Glyma06g36690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAACGATGAAGGCAATGATAAGAAAAAGAGAGTGGTTTTTGTGACTGTAGGGACAACCTGTTTCGATGCTCTTGTGAGAGCTGTGGATTCCAACAATGTTAAACAAGCCTTGTTTGCAAAAGGCTACACCCACCTTCTCATCCAAATGGGTCGTGGATCCTATCTTCCTACTAAGTCTGAAGGAGATGGTTCTTTGGCTGTAGACTACTTCACTTTTTCATCCAGTATTGCAGATCATCTCAGATCAGCTTCTCTTGTCATTAGCCATGCAGGGTCGGGTAGCATATTTGAGACATTGCAGCTGGGCAAACCTTTAATTGTGGTTGTAAATGAAGATTTGATGGATAATCATCAAAGTGAGTTAGCAGAAGAACTTGCTGATAGAAAACATCTGTATTGTGCTAGTCCTCAAACACTCCATCAAACTATAGCAAATATGGATTTAAGTTCTCTCTTTCCTTACTCTCCAGGTGATGCTACACCAGTGGCCAAGCATATAAACAATCTCCTTGGTTTTCCTGATGATTGA

>Glyma06g36690.4   sequence type=CDS   gene model=Glyma06g36690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAACGATGAAGGCAATGATAAGAAAAAGAGAGTGGTTTTTGTGACTGTAGGGACAACCTGTTTCGATGCTCTTGTGAGAGCTGTGGATTCCAACAATGTTAAACAAGCCTTGTTTGCAAAAGGCTACACCCACCTTCTCATCCAAATGGGTCGTGGATCCTATCTTCCTACTAAGTCTGAAGGAGATGGTTCTTTGGCTGTAGACTACTTCACTTTTTCATCCAGTATTGCAGATCATCTCAGATCAGCTTCTCTTGTCATTAGCCATGCAGGGTCGGGTAGCATATTTGAGACATTGCAGCTGGGCAAACCTTTAATTGTGGTTGTAAATGAAGATTTGATGGATAATCATCAAAGTGAGTTAGCAGAAGAACTTGCTGATAGAAAACATCTGTATTGTGCTAGTCCTCAAACACTCCATCAAACTATAGCAAATATGGATTTAAGTTCTCTCTTTCCTTACTCTCCAGGTGATGCTACACCAGTGGCCAAGCATATAAACAATCTCCTTGGTTTTCCTGATGATTGA

>Glyma06g36690.5   sequence type=CDS   gene model=Glyma06g36690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAACGATGAAGGCAATGATAAGAAAAAGAGAGTGGTTTTTGTGACTGTAGGGACAACCTGTTTCGATGCTCTTGTGAGAGCTGTGGATTCCAACAATGTTAAACAAGCCTTGTTTGCAAAAGGCTACACCCACCTTCTCATCCAAATGGGTCGTGGATCCTATCTTCCTACTAAGTCTGAAGGAGATGGTTCTTTGGCTGTAGACTACTTCACTTTTTCATCCAGTATTGCAGATCATCTCAGATCAGCTTCTCTTGTCATTAGCCATGCAGGGTCGGGTAGCATATTTGAGACATTGCAGCTGGGCAAACCTTTAATTGTGGTTGTAAATGAAGATTTGATGGATAATCATCAAAGTGAGTTAGCAGAAGAACTTGCTGATAGAAAACATCTGTATTGTGCTAGTCCTCAAACACTCCATCAAACTATAGCAAATATGGATTTAAGTTCTCTCTTTCCTTACTCTCCAGGTGATGCTACACCAGTGGCCAAGCATATAAACAATCTCCTTGGTTTTCCTGATGATTGA

Predicted protein sequences of Glyma06g36690

Limit To All Plant Sequences

>Glyma06g36690.2   sequence type=predicted peptide   gene model=Glyma06g36690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNDEGNDKKKRVVFVTVGTTCFDALVRAVDSNNVKQALFAKGYTHLLIQMGRGSYLPTKSEGDGSLAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLQLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCASPQTLHQTIANMDLSSLFPYSPGDATPVAKHINNLLGFPDD*

>Glyma06g36690.4   sequence type=predicted peptide   gene model=Glyma06g36690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNDEGNDKKKRVVFVTVGTTCFDALVRAVDSNNVKQALFAKGYTHLLIQMGRGSYLPTKSEGDGSLAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLQLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCASPQTLHQTIANMDLSSLFPYSPGDATPVAKHINNLLGFPDD*

>Glyma06g36690.5   sequence type=predicted peptide   gene model=Glyma06g36690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNDEGNDKKKRVVFVTVGTTCFDALVRAVDSNNVKQALFAKGYTHLLIQMGRGSYLPTKSEGDGSLAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLQLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCASPQTLHQTIANMDLSSLFPYSPGDATPVAKHINNLLGFPDD*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain