Glyma06g36620 - SoyBase

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Report for Sequence Feature Glyma06g36620

Feature Type:	gene_model
Chromosome:	Gm06
Start:	38902357
stop:	38920930
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g36620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53850	AT	Annotation by Michelle Graham. TAIR10: haloacid dehalogenase-like hydrolase family protein \| chr5:21861155-21864817 REVERSE LENGTH=507	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0019509	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-methionine salvage from methylthioadenosine	SoyBase	N/A	ISS
GO:0071267	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-methionine salvage	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008967	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoglycolate phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0043167	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ion binding	SoyBase	N/A	ISS
GO:0043874	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acireductone synthase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG2630	KOG	Enolase-phosphatase E-1	JGI		ISS
KOG2631	KOG	Class II aldolase/adducin N-terminal domain protein	JGI		ISS
PTHR10640	Panther	PENTULOSE-5-PHOSPHATE-4-EPIMERASE-RELATED	JGI		ISS
PTHR10640:SF2	Panther	PENTULOSE-5-PHOSPHATE-4-EPIMERASE-RELATED	JGI		ISS
PF00596	PFAM	Class II Aldolase and Adducin N-terminal domain	JGI		ISS
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI		ISS
UniRef100_B9N1F9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 n=1 Tax=Populus trichocarpa RepID=MTBC_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1KDU3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDU3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g36620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g36620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g240100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g36620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g36620

Limit To All Plant Sequences

>Glyma06g36620.2   sequence type=transcript   gene model=Glyma06g36620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCTCTCTACGAAATCTGGCAAAAATAACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGTTATTATGATGAACTTGTGATCCCCATAATAGAGAACACAGCCTACGAATATGAGCTTACAGAATCTCTAGCTAAAGCTATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATATATATTTGGGGAGACTCGTGGATCAGTGCTAAAACTCAGGCTGAGTGTTATCATTACCTGTTTGATGCTGCTATCAAACTTCACCAATTAGGATTGGACTGGTCTACTCCTAATCATGGTCCAATAAAAAGTCTTAGAAGTCTAATGATTGCTGGGGAGTCAAATGCATCCGATAAGACAAGGAAGGCTAGTGGTGAAATTGATCCATTTCCACGTTGCATTGTCCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTTACTGAGGTTCTCTTCCCATATGCACGTCAAAATGTTGGGAGGCATCTATCTGTGACATATGATACTCCTGATACCGAAGCTGATATTAAGTTGCTTTGCTCACAAGTTCAAAGTGACCTTAAACAAGGGATTGCAGGTGCTGTGCCTATTCCCTCTGATGGTGCTTGTAAAAGAGCAGTCATTGATGCATTGGTAACTAATGTCGAAGCTATGATTAAAGCAGATAGAAAGATCACTGCCTTGAAAGAATTGCAGGGTCATATGTGGCGCACTGGTTATGAGAATAATGAATTGAAGGGAATAGTTTTTGATGATGTTCCAGAAGCTCTAGAAAAGTGGCATACCTTGGGCATAAAGGTATACATATATTCTAGTGGCAGTAGATTGGCTCAAAGGCTAATATTTGGACATACAAACCATGGGGACCTAAGAAAATATTTATCTGGCTTTTTTGACACCACAGTAGGGAACAAAAGAGAGACACGCAGTTACGTTGAAATTTCTGAGTCTCTTGGTGTTGATAAGCCATCAGATATTTTATTTGTCACTGATGTTTATCAAGAAGCTACAGCTGCTAAGGCAGCAGGCTTGGAGGTGATAATTTCTGTTCGACCAGGAAATGCACCTCTCCCTGAAAATCACGGCTTCAAGATGATCAGTTCCTTCTCTGAGATCTGAAAGTAGATGCTCTGAGACCTGAAAGTAGATGCAGTCATCTGAGACTATGTTAAAGGGAACATGGTAGCTACAGATATTGTAACTTCCATTTCAAATGAAATATATTGATGGAGCTAATCCAAGTTGCAGCTTTACTTGCCTTGTTTTTCAGATAATAAGAAAAAGTAAAACCTCCTTAAGTATTAATTTGAAAAAAGTTTGAGATCAGAAAATGAAGAAAAATTGTAAATTTATTTTGGAATATGTTTTGAAAACATATAAATAGAAAACCTGTGTTCTCACTTATTTTAGGCACAAGTCACCTTTGAAAACCAGAGTCAAAATTGCTAAGAGAAAAAATTC

Coding sequences of Glyma06g36620

Limit To All Plant Sequences

>Glyma06g36620.1   sequence type=CDS   gene model=Glyma06g36620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTGCTACTGCTACTGCGGACAGCGTGTCCTCGCAGGCATACCTTGAAGGAAACGCAGTGAAGGAAACGAGAATTCTGATATCAGAACTCTGTCGCCACTTCTATTCTCTCGGATGGGTCTCTGGAACTGGTGGCAGCATCACCATCAAAGTCCACGATGACTCTATTTCCAAACCCCACCAACTCATACTCATGTCCCCTTCAGGTGTTCAGAAGGAAAGAATGGAACCAGAGGACATGTATGTGTTATCTCACACTGGATCAGTCTTGTCTGCTCCATCTCCCAAACCTTACCCTCATAAACCTCCCAAGTGTTCTGATTGTGGTCCACTTTTCATGAAGGCATATGAAATGTGTGATGCTGGGGCAGTTATCCACAGTCATGGAATAGAATCTTGTCTTGTAACAATGCTCAATCCTTTAGCAAAGGAATTTAAAATAACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGTTATTATGATGAACTTGTGATCCCCATAATAGAGAACACAGCCTACGAATATGAGCTTACAGAATCTCTAGCTAAAGCTATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATATATATTTGGGGAGACTCGTGGATCAGTGCTAAAACTCAGGCTGAGTGTTATCATTACCTGTTTGATGCTGCTATCAAACTTCACCAATTAGGATTGGACTGGTCTACTCCTAATCATGGTCCAATAAAAAGTCTTAGAAGTCTAATGATTGCTGGGGAGTCAAATGCATCCGATAAGACAAGGAAGGCTAGTGGTGAAATTGATCCATTTCCACGTTGCATTGTCCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTTACTGAGGTTCTCTTCCCATATGCACGTCAAAATGTTGGGAGGCATCTATCTGTGACATATGATACTCCTGATACCGAAGCTGATATTAAGTTGCTTTGCTCACAAGTTCAAAGTGACCTTAAACAAGGGATTGCAGGTGCTGTGCCTATTCCCTCTGATGGTGCTTGTAAAAGAGCAGTCATTGATGCATTGGTAACTAATGTCGAAGCTATGATTAAAGCAGATAGAAAGATCACTGCCTTGAAAGAATTGCAGGGTCATATGTGGCGCACTGGTTATGAGAATAATGAATTGAAGGGAATAGTTTTTGATGATGTTCCAGAAGCTCTAGAAAAGTGGCATACCTTGGGCATAAAGGTATACATATATTCTAGTGGCAGTAGATTGGCTCAAAGGCTAATATTTGGACATACAAACCATGGGGACCTAAGAAAATATTTATCTGGCTTTTTTGACACCACAGTAGGGAACAAAAGAGAGACACGCAGTTACGTTGAAATTTCTGAGTCTCTTGGTGTTGATAAGCCATCAGATATTTTATTTGTCACTGATGTTTATCAAGAAGCTACAGCTGCTAAGGCAGCAGGCTTGGAGGTGATAATTTCTGTTCGACCAGGAAATGCACCTCTCCCTGAAAATCACGGCTTCAAGATGATCAGTTCCTTCTCTGAGATCTGA

>Glyma06g36620.2   sequence type=CDS   gene model=Glyma06g36620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATGATAAAAGGAATCAAGGGGCATGGTTATTATGATGAACTTGTGATCCCCATAATAGAGAACACAGCCTACGAATATGAGCTTACAGAATCTCTAGCTAAAGCTATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATATATATTTGGGGAGACTCGTGGATCAGTGCTAAAACTCAGGCTGAGTGTTATCATTACCTGTTTGATGCTGCTATCAAACTTCACCAATTAGGATTGGACTGGTCTACTCCTAATCATGGTCCAATAAAAAGTCTTAGAAGTCTAATGATTGCTGGGGAGTCAAATGCATCCGATAAGACAAGGAAGGCTAGTGGTGAAATTGATCCATTTCCACGTTGCATTGTCCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTTACTGAGGTTCTCTTCCCATATGCACGTCAAAATGTTGGGAGGCATCTATCTGTGACATATGATACTCCTGATACCGAAGCTGATATTAAGTTGCTTTGCTCACAAGTTCAAAGTGACCTTAAACAAGGGATTGCAGGTGCTGTGCCTATTCCCTCTGATGGTGCTTGTAAAAGAGCAGTCATTGATGCATTGGTAACTAATGTCGAAGCTATGATTAAAGCAGATAGAAAGATCACTGCCTTGAAAGAATTGCAGGGTCATATGTGGCGCACTGGTTATGAGAATAATGAATTGAAGGGAATAGTTTTTGATGATGTTCCAGAAGCTCTAGAAAAGTGGCATACCTTGGGCATAAAGGTATACATATATTCTAGTGGCAGTAGATTGGCTCAAAGGCTAATATTTGGACATACAAACCATGGGGACCTAAGAAAATATTTATCTGGCTTTTTTGACACCACAGTAGGGAACAAAAGAGAGACACGCAGTTACGTTGAAATTTCTGAGTCTCTTGGTGTTGATAAGCCATCAGATATTTTATTTGTCACTGATGTTTATCAAGAAGCTACAGCTGCTAAGGCAGCAGGCTTGGAGGTGATAATTTCTGTTCGACCAGGAAATGCACCTCTCCCTGAAAATCACGGCTTCAAGATGATCAGTTCCTTCTCTGAGATCTGA

Predicted protein sequences of Glyma06g36620

Limit To All Plant Sequences

>Glyma06g36620.1   sequence type=predicted peptide   gene model=Glyma06g36620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAATATADSVSSQAYLEGNAVKETRILISELCRHFYSLGWVSGTGGSITIKVHDDSISKPHQLILMSPSGVQKERMEPEDMYVLSHTGSVLSAPSPKPYPHKPPKCSDCGPLFMKAYEMCDAGAVIHSHGIESCLVTMLNPLAKEFKITHMEMIKGIKGHGYYDELVIPIIENTAYEYELTESLAKAIEAYPKTTAVLVRNHGIYIWGDSWISAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPIKSLRSLMIAGESNASDKTRKASGEIDPFPRCIVLDIEGTTTPISFVTEVLFPYARQNVGRHLSVTYDTPDTEADIKLLCSQVQSDLKQGIAGAVPIPSDGACKRAVIDALVTNVEAMIKADRKITALKELQGHMWRTGYENNELKGIVFDDVPEALEKWHTLGIKVYIYSSGSRLAQRLIFGHTNHGDLRKYLSGFFDTTVGNKRETRSYVEISESLGVDKPSDILFVTDVYQEATAAKAAGLEVIISVRPGNAPLPENHGFKMISSFSEI*

>Glyma06g36620.2   sequence type=predicted peptide   gene model=Glyma06g36620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMIKGIKGHGYYDELVIPIIENTAYEYELTESLAKAIEAYPKTTAVLVRNHGIYIWGDSWISAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPIKSLRSLMIAGESNASDKTRKASGEIDPFPRCIVLDIEGTTTPISFVTEVLFPYARQNVGRHLSVTYDTPDTEADIKLLCSQVQSDLKQGIAGAVPIPSDGACKRAVIDALVTNVEAMIKADRKITALKELQGHMWRTGYENNELKGIVFDDVPEALEKWHTLGIKVYIYSSGSRLAQRLIFGHTNHGDLRKYLSGFFDTTVGNKRETRSYVEISESLGVDKPSDILFVTDVYQEATAAKAAGLEVIISVRPGNAPLPENHGFKMISSFSEI*

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