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Report for Sequence Feature Glyma06g36590

Feature Type:gene_model
Chromosome:Gm06
Start:38836149
stop:38837639
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g36590
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53870AT Annotation by Michelle Graham. TAIR10: early nodulin-like protein 1 | chr5:21870033-21871228 REVERSE LENGTH=370 SoyBaseE_val: 3.00E-53ISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0031225GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
PF02298PFAM Plastocyanin-like domain JGI ISS
UniRef100_C6TJW6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJW6_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9T076UniRef Annotation by Michelle Graham. Most informative UniRef hit: Early nodulin-like protein 2 n=2 Tax=Arabidopsis thaliana RepID=ENL2_ARATH SoyBaseE_val: 3.00E-49ISS

Expression Patterns of Glyma06g36590
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g36590 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g239900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g36590
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g36590
>Glyma06g36590.1   sequence type=CDS   gene model=Glyma06g36590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTCAAAAACCTCTATGGCTATTCTTGCTTCTCCTCACTCTCCTCTCAAGCTCCCAAGCCAACAAATTCAACGTTGGTGGAAGCAAAGGGTGGGTTCCAAACCCTTCCGAGAGTTACAACAATTGGGCTGGAAGAAACCGATTCCAAATCAATGACACAATAGTTTTCAAGTACAATAAGGGTTCGGATTCGGTGTTGGAAGTGAAGAAGGAAGATTACGACAAGTGCAACAAGACCAACCCAATCAAAAAGTTTGAAAACGGTGACACTGAATTCAAGTTTGATCGATCAGGACCATTCTACTTCATTAGTGGAAAAGATGGGAACTGTGAAAAGGGTCAAAAATTAATCGTTGTTGTTTTGACCCCAAGAACACCACCAACACCAAAAACACCACCGTTTCCAAAAACTTCACCTTCACCTTCACCTTCACAATCTCCAAAGGCAAACCCACCAACCGTATCGCCGCCGTTACCGTCACCGTCACCATCGGTTCATTCAAAATCCCTATCTCCGGCGAGTTCTCCTGTGCCGGCCGTCGGTACTCCGGCAATATCTCCGGCGATTTCTATTCCGACACTGGCACCGGAGACGGGGACTCCACCGCCGTCTCTTGGGCCTTCATCATCTTCACCACCGTCTCCGGGTCCTTCATCTTCTTCACCGCCGTCTCCGGGTCCTTCATCATCTTCACCGCCGCCGGCGGGGCCAACTTCACCGCCGTCGTTAGCACCGTCGTCTAATTCAACTGCGCCGTCACCGAAGAACAGTGGATTTTCTGTGGCTCCTTCAAGCGTTTTGATGTATTGTGTTACAATTGTTGCTGGTGCTGCGTTGTTGCGTTATTGA
Predicted protein sequences of Glyma06g36590
>Glyma06g36590.1   sequence type=predicted peptide   gene model=Glyma06g36590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFQKPLWLFLLLLTLLSSSQANKFNVGGSKGWVPNPSESYNNWAGRNRFQINDTIVFKYNKGSDSVLEVKKEDYDKCNKTNPIKKFENGDTEFKFDRSGPFYFISGKDGNCEKGQKLIVVVLTPRTPPTPKTPPFPKTSPSPSPSQSPKANPPTVSPPLPSPSPSVHSKSLSPASSPVPAVGTPAISPAISIPTLAPETGTPPPSLGPSSSSPPSPGPSSSSPPSPGPSSSSPPPAGPTSPPSLAPSSNSTAPSPKNSGFSVAPSSVLMYCVTIVAGAALLRY*






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