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Report for Sequence Feature Glyma06g36415

Feature Type:gene_model
Chromosome:Gm06
Start:38560917
stop:38572369
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g36415
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G55540AT Annotation by Michelle Graham. TAIR10: Nuclear pore complex protein | chr1:20734759-20743049 REVERSE LENGTH=1816 SoyBaseE_val: 1.00E-79ISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0010070GO-bp Annotation by Michelle Graham. GO Biological Process: zygote asymmetric cell division SoyBaseN/AISS
GO:0033044GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization SoyBaseN/AISS
GO:0042138GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation SoyBaseN/AISS
GO:0045132GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_B9SBM1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nuclear pore complex protein nup153, putative n=1 Tax=Ricinus communis RepID=B9SBM1_RICCO SoyBaseE_val: 4.00E-78ISS
UniRef100_UPI000233A432UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A432 related cluster n=1 Tax=unknown RepID=UPI000233A432 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g36415
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g36415 not represented in the dataset
Glyma06g36415 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g36415 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma06g36415
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g36415
>Glyma06g36415.1   sequence type=CDS   gene model=Glyma06g36415   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGAAAAATATACATGGAAGGCATATATAAGCAAGCTTCTGATAGCCGATATTGGGACCTATGGAACAGGCAAAAGTTGAATTCAGAACTTGAGCTAAAGCGACAGCATATATTGAGTCTGAATCAGGACTTAACCTATCAGTTAATTGAATTGGAGAGGCATTTCAATGCCCTTGAACTAAATAAATTCAGTCAATATGGTGGTCGGTGCATAGGTCATGGACCTTCCCAAAATAGATATGGACCTTCAAGACACACCCTGTCATTGCATAGCTTACATAATTCAGTCAGTTCACAACTTGTAGCTGCAGAGAATCTCTCTGAGTGCCTTTCAAAACAAATGGAAGCATTGAGTTTAAAGTCTCAAACTGAGGAAAGAAAGAATGTGAAGGAGCTATTTGAAACAATAGGAATTCCATATGAAGCAGCTTTTGGCTCTCCAGACATGAAAGGTTTTATGAAGACTCCTCCCAGTAAGAAGACCTTATTTTCTGATTTGACTGCTAATAAAGATCAATCTAGGAGAAATCAAGCCAGTGCAATGAAGAGTTTTGAACCAGAAACGGCTAGGAGGAGGAGAGACTCACTTGACCAGAGTTGGACCTGTTTTGAACCTCCTAAGACCATCGTTAAAAGGATGTTACTGCAAGAACTTCAGCAAGTGAATAGGAATGAATCATTATTTTCAATGAATAAAGATAAAAAGGTTTCCACATTGGAAGAATCTTCTCCTCGTCATATAGATGCCAGAATTCCTTCAATTGTCTTCCCTGCTTCTAATATTAAAGCAAGCATTCTGGATTCTCATCTTGAACTTGAAGAGGTGTCAGAACACTCAAAGGCATTTATGCCTGCTGACAGCCTCCGAGCACCCACTCATGTTTTGGAGTCTAAGTCTAGTGTTTTGCAAAAAAACAATATTTTAACTATTCCCTCACAGCCTGCATTCCATTTGTCACCTACAATGGTGCGTGGTCATTCCACAGAAACTAAAGATTTGGCTGCTGAAAAGTCTACTGTTCAAAAGTTTGATTTAATCTCTAATAGTGAAAATAAGCCTACTCTGCTTTGGAAATTGCCTCAAAACCCCTCAATCCCTACCTATTCAACCACAGAAACACCTTCAATGAAGATTAAATCCAGTGAAATGCCCTTTCCAAATAGTAAAATGACTATGGCTTCAAGTTCCACAACCGGAGACAAACTTTCTAGTTCATTTACTCCTGAGTCTTGGGGAAAAGACTTCCCATCCTCTGGGTCACATTTATCCACTATTTCTGCACCCTCAACCTTCCTTGGAAAAGTTACCGAGTTCCATGTTGATAAAAGCTTGCCCAAAGAAAATATTCCTGCGGTGCCCACATTTGGTGGTTCATTTAAATCTCTATCATTCCCAACTATTAAAACATCACCCTCTCCATCGTCATCATCTGTCTCATCTGCAGCAGTGTCAGTGGCATCAAGCAGTTTGACTAGTTCAAACACCAGTACAGATTCTAATCGTGTCATGTCATCATCTTCAACATCAGCTTTTCTTCACTTATCTAATCAAGCACCTAAAGACACAGTGCCATCATTACCTAACCCACCTGGCTTGAAGTTAACCTTAGAGTCACTTAAGTCAGAGATTCCACCAGCTGCTGCACTTAAATCAGATATGCAACCAGCTGCTGTGTCTAATTCAAAGACTGTTTTAGATGCTTCTGCAGAGGTAGTCACTCGGCCAAATGAACCTTTAAATGGTGCATCTGAATTGAAGCTTGGACCCTCAAGAAATTACAGTCCTACTATTGAACAACCTTTCAACAATACAACAAGTTCTGATCTCAATGTTGTCTCAGTTTCTCAAGCAGCACAGCCTTCTGATGCTTCTTTGCAGCTTTCAACTTCTTTCCTTTCTTCTGCTAGTGTTTCAAACGGGAAAAATGAGGGTTTGGATTTTGGAATCTCACATGAGGATGAGATGGAGGAAGAAGCTCCTGAGACAAGTAACAACACAACTGAACTTAGTTTGGGAAGCTTTGGCGGGTTTGGGATTAGCTCAAGCCCCAACCCATCAATGCCTAAGACAAATCCTTTTGGGGGTTCATTTAATAATGTAGGAACAAGTTTATCAAGCTCTACAGTTACATTCTCTGTTCCTAGTGGAGAGTTGTTTAAACCAGCATCTTTTAATTTCTCAAGCCCCCAGTCATCTTCACCAACCCAGACAACAAATTCAGGTGCATTCTCTGGTGGCTTCAATGCTGTGGCAGCTGTTCCCGCACAAGCTCCAGGTGGGTTTGGGCAGCCAGCACAAATTGGATCAGGGCAACAGGTTCTTGGGTCAGTTCTCGGTGGTTTTGGACAATCAAGACAGCTTGGTAGTGGTTTTGCTGCTCCCAGTGGTTTCGGTGGTGGATTTGCTGGCAGTAGTTCTCCTAGTGGCTTTTCAAATACTGCAATTGGTGGAGGGTTTGCTGGCATTGCGTCTACAGGTCGAGGCTTTGGTAGTGTTGCATCCACCGGTAGTGGTGGATTTTCTGGAATTGCTTCTGGGGGTGGATTTGGTGGTGGTGCAGCCCCTGGCGGTGGTTTTGGTGGGGCGGCTGCCCCTGGCAGTGGTTTTGGTGCTGCTGCCGCCCCTGGTGGTGGTTTTGGTGCTGCTGCCACCCCTGGTGGTGGTTTTGCTGGTGCTGCTGCCCCTGGTGTTGGTTTTGGTGCTGCTTCTTCTACTGGTGGATTTGCAGGAGCTGGTTCAGGTGGTGGTTTTGGAGCATTTAGCAGCCAAGGAAGTGGTGGTTTTGGTGCTTTTGGTTCAGGTGGAGGCAGTAAACCACCTGAGCTGTTCACACAGATGAGAAAGTAG
Predicted protein sequences of Glyma06g36415
>Glyma06g36415.1   sequence type=predicted peptide   gene model=Glyma06g36415   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARKIYMEGIYKQASDSRYWDLWNRQKLNSELELKRQHILSLNQDLTYQLIELERHFNALELNKFSQYGGRCIGHGPSQNRYGPSRHTLSLHSLHNSVSSQLVAAENLSECLSKQMEALSLKSQTEERKNVKELFETIGIPYEAAFGSPDMKGFMKTPPSKKTLFSDLTANKDQSRRNQASAMKSFEPETARRRRDSLDQSWTCFEPPKTIVKRMLLQELQQVNRNESLFSMNKDKKVSTLEESSPRHIDARIPSIVFPASNIKASILDSHLELEEVSEHSKAFMPADSLRAPTHVLESKSSVLQKNNILTIPSQPAFHLSPTMVRGHSTETKDLAAEKSTVQKFDLISNSENKPTLLWKLPQNPSIPTYSTTETPSMKIKSSEMPFPNSKMTMASSSTTGDKLSSSFTPESWGKDFPSSGSHLSTISAPSTFLGKVTEFHVDKSLPKENIPAVPTFGGSFKSLSFPTIKTSPSPSSSSVSSAAVSVASSSLTSSNTSTDSNRVMSSSSTSAFLHLSNQAPKDTVPSLPNPPGLKLTLESLKSEIPPAAALKSDMQPAAVSNSKTVLDASAEVVTRPNEPLNGASELKLGPSRNYSPTIEQPFNNTTSSDLNVVSVSQAAQPSDASLQLSTSFLSSASVSNGKNEGLDFGISHEDEMEEEAPETSNNTTELSLGSFGGFGISSSPNPSMPKTNPFGGSFNNVGTSLSSSTVTFSVPSGELFKPASFNFSSPQSSSPTQTTNSGAFSGGFNAVAAVPAQAPGGFGQPAQIGSGQQVLGSVLGGFGQSRQLGSGFAAPSGFGGGFAGSSSPSGFSNTAIGGGFAGIASTGRGFGSVASTGSGGFSGIASGGGFGGGAAPGGGFGGAAAPGSGFGAAAAPGGGFGAAATPGGGFAGAAAPGVGFGAASSTGGFAGAGSGGGFGAFSSQGSGGFGAFGSGGGSKPPELFTQMRK*






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