Glyma06g36380 - SoyBase

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Report for Sequence Feature Glyma06g36380

Feature Type:	gene_model
Chromosome:	Gm06
Start:	38545298
stop:	38554455
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g36380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G55540	AT	Annotation by Michelle Graham. TAIR10: Nuclear pore complex protein \| chr1:20734759-20743049 REVERSE LENGTH=1819	SoyBase	E_val: 2.00E-59	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0010070	GO-bp	Annotation by Michelle Graham. GO Biological Process: zygote asymmetric cell division	SoyBase	N/A	ISS
GO:0033044	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization	SoyBase	N/A	ISS
GO:0042138	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation	SoyBase	N/A	ISS
GO:0045132	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_F4I1T7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nuclear pore complex protein n=2 Tax=Arabidopsis thaliana RepID=F4I1T7_ARATH	SoyBase	E_val: 7.00E-57	ISS
UniRef100_UPI000233A432	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A432 related cluster n=1 Tax=unknown RepID=UPI000233A432	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g36380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g36380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma06g36380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g36380

Limit To All Plant Sequences

>Glyma06g36380.1   sequence type=CDS   gene model=Glyma06g36380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTGTTCTGAATTAGTTGTTCAATCCTTCTGTGATATTTACCAAGGACTAATTGATGATATTGTACCCTTTGGAAGTGGGCCTTACCTTTTATTGGCATACTTAAAACAATGCCAACTTGCAATCAATGCCAACATGAAGAATACAGATCAGCACATTATGTTGCTTGGTTGGTCAGCAGATGAAGACAAGAGTGAAGCTGTAGTTATTGATATTGAGCGAGAAAATTGTGTTCCAAGAATTGAACTTCAAGAAAATGGTGATGATAATTTGCTCTTGGGGCTATGCATTGATAATGTTTCAATCTATCAAAAAGTTGGGGTTCAAATTGATGTGGAGGAAAGGACAGAGCTCTTACCACATTGTGTTCTTATATGCCTTACATTAGAGGGCAAACTCGTCATGTTCCATGTTGCTAGCTTCATTTGTTTGATTGCTTCAGATAAGAATATAAGTTGTGTTTTGGCAATATGGTGCCTTGCAGGATGTAAAACTTCACCTGAGATTGATTCTGTTCTGCACAATGATGAAGATACTTCTGTAAACCTTCATGAGGATGAAGGTTGCACTCTTCCTCAGGGATTGCAGAAACAGGAATCAGATAAGGGTTATTCTATTTGTCTTCAGTTAATGACATTTCCAATAAAAACAAATTATGTGCAGACTTTTGAGGTTAGTGGGAATCTGACAGCCAAGCCCTCTGAAGTGGAATTAGTGGGAAATTCAGAGAGTCTAAAGTCTAATGTACAGCAAGTTGTTCCTGATGTAGATGCAATCCAAAATACAGGTAATCAAAATCCATTTCTTCCAGGCGAACAGCAAAAAAACTTGGGACAAAAGACCGCAACACTTGGAACTAGCATTGGTTCTTTAATGGTAAACAGTCATTCTGTTTCTTCTGGGTTGTCAAGTTATAACAATTTACAATCAACTACTGAGAAGACTAGGGAGCTGTGGACTGCAAATAGTTCAAGGGACTCACAGAGAGCTTCTTTGCCGGCTTCAAGCTATGCTGATGGTGTTGGTTTTCAAAATAAAAAATATACCATGGGTGCTACAAATGATGTGAATGACGTATCTCCAGCCATCGATTCTGCCAGTAGGCTAGTTCAGAGTGGGGGACAACTATCTACCTTAGTTGCTGGTAATATGCAACCAATCTTGAATAGCAGCTCACGTTTTTCATCTGATGGAAATATTGCAGCTGTAAAGTCATCTGCTCGGAAGTTCCTTCCTTCTAATGAGCAGCATGGTACTCCATCCAAGCTTGGGATATTCGGTTCTGATTTATCAAAGCAGTTTGGCAATATTAATGAGATGACTAAAGAATTGGATCTACTTTTGAAATCAGTAGAAGAGACTGGTGGCTTTAGAGATGCTTGCACAAGGTCACTACGAAGTTCAATTGAAGCAGTGGAGCAAGGCATGGATGCTCTGTCTAAAAAATGCAAAATATTGACG

Predicted protein sequences of Glyma06g36380

Limit To All Plant Sequences

>Glyma06g36380.1   sequence type=predicted peptide   gene model=Glyma06g36380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
DCSELVVQSFCDIYQGLIDDIVPFGSGPYLLLAYLKQCQLAINANMKNTDQHIMLLGWSADEDKSEAVVIDIERENCVPRIELQENGDDNLLLGLCIDNVSIYQKVGVQIDVEERTELLPHCVLICLTLEGKLVMFHVASFICLIASDKNISCVLAIWCLAGCKTSPEIDSVLHNDEDTSVNLHEDEGCTLPQGLQKQESDKGYSICLQLMTFPIKTNYVQTFEVSGNLTAKPSEVELVGNSESLKSNVQQVVPDVDAIQNTGNQNPFLPGEQQKNLGQKTATLGTSIGSLMVNSHSVSSGLSSYNNLQSTTEKTRELWTANSSRDSQRASLPASSYADGVGFQNKKYTMGATNDVNDVSPAIDSASRLVQSGGQLSTLVAGNMQPILNSSSRFSSDGNIAAVKSSARKFLPSNEQHGTPSKLGIFGSDLSKQFGNINEMTKELDLLLKSVEETGGFRDACTRSLRSSIEAVEQGMDALSKKCKILT

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