Report for Sequence Feature Glyma06g36170
Feature Type: gene_model
Chromosome: Gm06
Start: 38262170
stop: 38263610
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g36170
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G15250 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53163.1); Has 409 Blast hits to 218 proteins in 63 species: Archae - 0; Bacteria - 22; Metazoa - 178; Fungi - 77; Plants - 38; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink). | chr3:5136503-5137183 REVERSE LENGTH=226
SoyBase E_val: 3.00E-19 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1KDT0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KDT0_SOYBN
SoyBase E_val: 1.00E-143 ISS
UniRef100_Q9LE53 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAF34834.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LE53_ARATH
SoyBase E_val: 9.00E-13 ISS
Expression Patterns of Glyma06g36170
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g36170
Paralog Evidence Comments
Glyma12g27390 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g36170 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g238300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g36170
Coding sequences of Glyma06g36170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g36170.1 sequence type=CDS gene model=Glyma06g36170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACAACACCACACACCACAAAAAGCCCTCCTCCGGGGACTCCTTCTCCTTCCCTAGCACCCCAACCCCGGACTCGGCCGACTTCGAGTTCGGCTCCCTCACGCCGGACTCGTCCTCGGCCGAGCCCTTCGCAGGCTCTCCGGCCGACCACCTCTTCTTCAACGGCCGCCTCCAGCCCCACTACTTCCCCATTACCAGCCGCACCAGCAGCACCAGGGACTCGCTTTTCTCGTCAAGAAGCAACAGCACCAACAGCAGCTGCAGCAGCGCCAGGACAAGCTCCAGTGACAGCTCCGAGCGAAAAGCCTTCCACAACAAGCACAAGGGTGATGGTGGTGGCTCACTTAGGGCAAAGACTCAGTCTCATAATCAAGCATATTGTTCCCAGAGGTGGCAGTATATAACGCCGGTGCCCGCCGCGTTGAGCCGCGACGGCTCCGTAAGAAAAAGGAGGGATACAAACCAAGGGAAGAAGAAGAAGAAGAAGGACAAAGGGTCCAAAAGCAACAACAACAAAAACAAAGATAACAATAATAAAAATAATAAGGGTGTTAGGTTGAGGTTTGGGAAGAGGATTTTGCGCTGGTTTCTGATGGCTTGTAGAGAATGCCATGCCATGGAACCTTCATCCAAGGGTCGTAATAAAGAGATTGTGATTTGA
Predicted protein sequences of Glyma06g36170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g36170.1 sequence type=predicted peptide gene model=Glyma06g36170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNNTTHHKKPSSGDSFSFPSTPTPDSADFEFGSLTPDSSSAEPFAGSPADHLFFNGRLQPHYFPITSRTSSTRDSLFSSRSNSTNSSCSSARTSSSDSSERKAFHNKHKGDGGGSLRAKTQSHNQAYCSQRWQYITPVPAALSRDGSVRKRRDTNQGKKKKKKDKGSKSNNNKNKDNNNKNNKGVRLRFGKRILRWFLMACRECHAMEPSSKGRNKEIVI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
