SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g36076

Feature Type:gene_model
Chromosome:Gm06
Start:38078279
stop:38084744
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g36076
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53920AT Annotation by Michelle Graham. TAIR10: ribosomal protein L11 methyltransferase-related | chr5:21892124-21894087 FORWARD LENGTH=371 SoyBaseE_val: 6.00E-115ISS
GO:0006479GO-bp Annotation by Michelle Graham. GO Biological Process: protein methylation SoyBaseN/AISS
GO:0006744GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0008276GO-mf Annotation by Michelle Graham. GO Molecular Function: protein methyltransferase activity SoyBaseN/AISS
PTHR18895Panther METHYLTRANSFERASE JGI ISS
PTHR18895:SF46Panther RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE-RELATED JGI ISS
PF06325PFAM Ribosomal protein L11 methyltransferase (PrmA) JGI ISS
UniRef100_Q9FN34UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein L11 methyltransferase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9FN34_ARATH SoyBaseE_val: 3.00E-112ISS
UniRef100_UPI000233A2B4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A2B4 related cluster n=1 Tax=unknown RepID=UPI000233A2B4 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g36076
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g36076 not represented in the dataset
Glyma06g36076 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g36076 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g237700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g36076
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g36076
>Glyma06g36076.1   sequence type=CDS   gene model=Glyma06g36076   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGCCTGGAATTTCCTCAAACAGTTAACGTGCACCGTTGGCGCTCATTCTCCCACCCTCTCCCGTCGCCTCATACACTACTCATTACTTGTTCCCTCTCTCTCCGCTCATCACAAAATTGTTAGGTACCAATGGCTTCCCCATTTCCGTGTCAATCTTTATGCCGCAGTTCCAAATGCAAAGTTTTCAACAGCTTCTTCTTCCCAAACTCTATCAGACACGTCTTTGGCTCCACGTGCTCCTTATACTTCCGTTTTGATTCACTGTCCTAAAGACACTGCAGATGTGCTTGCAGAAGCTCTTTTATGCTTTGGTGCAAGTTCTGTTAGCATGGATCAAGATGATGTCTCTCAAAGTACAGATGAGATTTGCATTAGTTCAATATTTCATGAAGTTGAGGATATAAATGTGAGCATTTCACATGCAGCTGATTCTATTGGTTTGAAGGAGATACCAAGATATGAAGTTAAAATTGATGACGAGGAGGACTGGATGAAAAGATCTCAGGAATCACTTCATCCAGTTCAAGTTACTGAAGGGCTATGGGTGGTGCCCAAGTGGTGTACTCCACCGGATGTTCAAGCAACAAATATAATTGTCAATCCTGGACTAGCCTTTGGAACGGGGGAACATGCCACTACCAAACTCTGTCTATTACTCTTACATGGTTGTATAAAAGGAGGGGAGCACATTCTGGACTATGGAACGGGAACTGGAATTCTTGCAATTGCGGCTCTTAAGTTTGGAGCTGCCTTTGCTGTTGGAGTTGATGTAGATTCAGAAGCAATTGCATCAGCATCTCAAAACGCTTACCTGAACAACATTGGACAAGACAAAATGCAACTGCACCTGGTTGCTAGCAAAACCTCTTCATCGTCCAAAAATGACTTGACATTTGGAGTTATGGAGGGAGAAAATACTTGTGAGATACATCCAGTCACTGATGAGGAAAAGTTTGATGTGGTCGTTGCAAATATACTCTTAAATCCTTTATTGGATCTTGCTGATCAAATTATCTCTCATGCAAAGCCCGGAGCAGTTGTTGGTCTCTCCGGTATCTTATCGGAGCAGGTCCAGTACATTATTGAAAGATATTCACCATTCTTAGAAGGCATAGAAGTGTCCAAAATGGATGACTGGGCCTGTGTGAGTGGTAGAAAAAAAAAATTTGAATGTGAGGTGACTCATTAA
Predicted protein sequences of Glyma06g36076
>Glyma06g36076.1   sequence type=predicted peptide   gene model=Glyma06g36076   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTAWNFLKQLTCTVGAHSPTLSRRLIHYSLLVPSLSAHHKIVRYQWLPHFRVNLYAAVPNAKFSTASSSQTLSDTSLAPRAPYTSVLIHCPKDTADVLAEALLCFGASSVSMDQDDVSQSTDEICISSIFHEVEDINVSISHAADSIGLKEIPRYEVKIDDEEDWMKRSQESLHPVQVTEGLWVVPKWCTPPDVQATNIIVNPGLAFGTGEHATTKLCLLLLHGCIKGGEHILDYGTGTGILAIAALKFGAAFAVGVDVDSEAIASASQNAYLNNIGQDKMQLHLVASKTSSSSKNDLTFGVMEGENTCEIHPVTDEEKFDVVVANILLNPLLDLADQIISHAKPGAVVGLSGILSEQVQYIIERYSPFLEGIEVSKMDDWACVSGRKKKFECEVTH*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo