Glyma06g35981 - SoyBase

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Report for Sequence Feature Glyma06g35981

Feature Type:	gene_model
Chromosome:	Gm06
Start:	37968379
stop:	37975875
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g35981

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G26860	AT	Annotation by Michelle Graham. TAIR10: lon protease 1 \| chr5:9451183-9456631 FORWARD LENGTH=940	SoyBase	E_val: 0	ISS
GO:0000741	GO-bp	Annotation by Michelle Graham. GO Biological Process: karyogamy	SoyBase	N/A	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0006200	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP catabolic process	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0006515	GO-bp	Annotation by Michelle Graham. GO Biological Process: misfolded or incompletely synthesized protein catabolic process	SoyBase	N/A	ISS
GO:0007005	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrion organization	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0034599	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to oxidative stress	SoyBase	N/A	ISS
GO:0051131	GO-bp	Annotation by Michelle Graham. GO Biological Process: chaperone-mediated protein complex assembly	SoyBase	N/A	ISS
GO:0051260	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein homooligomerization	SoyBase	N/A	ISS
GO:0070407	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0042645	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial nucleoid	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003697	GO-mf	Annotation by Michelle Graham. GO Molecular Function: single-stranded DNA binding	SoyBase	N/A	ISS
GO:0003727	GO-mf	Annotation by Michelle Graham. GO Molecular Function: single-stranded RNA binding	SoyBase	N/A	ISS
GO:0004176	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent peptidase activity	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008236	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
PTHR10046	Panther	ATP DEPENDENT LON PROTEASE FAMILY MEMBER	JGI		ISS
PTHR10046:SF23	Panther	LON PROTEASE HOMOLOG, MITOCHONDRIAL	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
PF02190	PFAM	ATP-dependent protease La (LON) domain	JGI		ISS
UniRef100_I1KDR9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDR9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1NEZ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lon protease homolog n=1 Tax=Glycine max RepID=I1NEZ7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g35981

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g35981 not represented in the dataset	Glyma06g35981 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g35981 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma06g35981

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g35981

Limit To All Plant Sequences

>Glyma06g35981.1   sequence type=CDS   gene model=Glyma06g35981   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCTTGAACATATAGGTGATTTTACTTATCCAAGGCTTGCAGATTTTGGTGCTGCAATATCCGGGGCAAATAAATTGCAATGCCAACAAGTTCTCGAAGAGCTAGATGTGTATAAGCGATTAAAACTTACACTGGAGTTGGTAAAGAAAGAGATGGAAATAAGCAAGATTCAGGCTTGTGTTGATTCTTGTCAGGAATCAATTGCTAAAGCAATTGAAGAAAAGATAAGTGGTGAGCAGCGTCGTTACTTGTTAAATGAGCAGCTTAAGGCCATAAAGAAGGAACTGGGACTGGAGACTGATGACAAAACAGCTCTTACTGGTAAATTCAGGGAAAGGATTGAGCCAAAGAGAGAAAAATGCCCACCTCATATTTTACAAGTTATAGATGAAGAACTTGCAAAGCTACAGCTGTTGGAGGCTAGTTCCAGTGAATTCAGTGTTACCCGTAACTACTTAGACTGGTTGACTGCACTGCCTTGGGGTGAATACAGTGATGAGAACTTTGATGTTACTCGGGCGCAAAAGATTCTTGATGAAGACCATTATGGATTAACTGATGTGAAGGAAAGGATACTGGAATTCATAGCTGTTGGGAAATTAAGAGGGACTTCACAAGGGAAAATTATCTGTCTTTCTGGTCCACCTGGAGTGGGCAAAACAAGTATTGGTCGTTCAATTGCACGTGCCTTGAACCGAGGATTAGCTGATGTGGCTGAAATCAAGGGTCATCGTCGAACCTATATTGGTGCTATGCCAGGGAGGATGGTACAATGCCTTAAGAATGTGGGCACAGCCAACCCTCTTGTTTTGACTGATGAGATTGACAAATTGGGCAGAGGACATGCTGGTGATCCAGCAAGTGCTTTGTTAGAGCTTCTGGATCCAGAGCAGAATGCTAATTTTCTGGATCACTATCTTGATGTTACCATTGATCTATCAAAGGATGAATGTGAAGGAAAAGAAAAGATAAAGAGCCTAGAAGTGTTGAATCTGGTTACAGGATTTGAGATACAAAAAATGAAGAAGTCAAACATGTTGGATCAAGTGGCCTCAGAATAA

Predicted protein sequences of Glyma06g35981

Limit To All Plant Sequences

>Glyma06g35981.1   sequence type=predicted peptide   gene model=Glyma06g35981   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLEHIGDFTYPRLADFGAAISGANKLQCQQVLEELDVYKRLKLTLELVKKEMEISKIQACVDSCQESIAKAIEEKISGEQRRYLLNEQLKAIKKELGLETDDKTALTGKFRERIEPKREKCPPHILQVIDEELAKLQLLEASSSEFSVTRNYLDWLTALPWGEYSDENFDVTRAQKILDEDHYGLTDVKERILEFIAVGKLRGTSQGKIICLSGPPGVGKTSIGRSIARALNRGLADVAEIKGHRRTYIGAMPGRMVQCLKNVGTANPLVLTDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVTIDLSKDECEGKEKIKSLEVLNLVTGFEIQKMKKSNMLDQVASE*

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