Glyma06g35330 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g35330

Feature Type:	gene_model
Chromosome:	Gm06
Start:	37119037
stop:	37121467
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g35330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G46690	AT	Annotation by Michelle Graham. TAIR10: beta HLH protein 71 \| chr5:18945639-18947434 FORWARD LENGTH=327	SoyBase	E_val: 6.00E-69	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR11534	Panther	MYOGENIC FACTOR	JGI		ISS
PTHR11534:SF7	Panther	MYOGENIC FACTOR MYF-5	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7LH18	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH96 n=1 Tax=Medicago truncatula RepID=G7LH18_MEDTR	SoyBase	E_val: 1.00E-144	ISS
UniRef100_I1KDQ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDQ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g35330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g35330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g095500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g35330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g35330

Limit To All Plant Sequences

>Glyma06g35330.1   sequence type=CDS   gene model=Glyma06g35330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTGGAAACTCTTGCTTCCAATGAGTTCTCCAACTTCATTATCTATGACACTATCTCTGCAACTCCATTTAGCAGCCATGGCTCTCCGGAGGCTAGTTTCTTGGAAAGTTTAGTGAACTATCAGGAGCATGACCCTGCATTTGATAACAGCGCATTGAGGACCCGAAATCACCAAGCCGGCGAACAAGAAAGCGTTGGCAGGAGGCAGAATGTGGTGGGGGTGCAAGTGCAAGGGAGGAAGAAGAGGAGAAGGAAACCAAGGGTTTGCAAAAACAAGGAAGAGGCTGAGACACAAAGAATCACCCACATTACAGTGGAAAGAAACCGCCGGAAGCAGATGAATGAACACCTTGTTGTCCTTCGTTCACTCATGCCTGAGTCCTACGTTCAAAGGGGTGACCAGGCCTCTATAGTTGGTGGTGCCATAGAGTTTGTGAAGGAGCTGGAGCACCTCTTGCAATCACTTGAAGCTAGAAAGTTGCAACTTTTACATCAAGAAGTTGTACAAGCCAATGAAAATACGGCCATTTCCAAACTCATGCAACCCCCTTTTGCACAATTTTTTTCGTATCCTCAGTACACATGGTCGCAGACTCCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTTACTTTAATCGAGACCCATGCAAATCTTCGGATTCTCACTAGGAGAAACAGCCCCGGGCAGCTAACAAAGTTAGTAGCTGGTTTTCAAACACTGTGCCTCACCGTCCTACATCTTAATGTCACCACTATAGACCCTTTGGTATTCTATTCCATCAGTGCTAAGGTTGAAGAAGGATTCCAACTTTGTTCAGTAGATGGTATTGCAACGGCAATTCATCATTTGCTTGCTAGAATCGAAGAAGAGGCTTCCCTTTGCTCTTGA

Predicted protein sequences of Glyma06g35330

Limit To All Plant Sequences

>Glyma06g35330.1   sequence type=predicted peptide   gene model=Glyma06g35330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALETLASNEFSNFIIYDTISATPFSSHGSPEASFLESLVNYQEHDPAFDNSALRTRNHQAGEQESVGRRQNVVGVQVQGRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLVVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEARKLQLLHQEVVQANENTAISKLMQPPFAQFFSYPQYTWSQTPNKYTSKTKAAIADIEVTLIETHANLRILTRRNSPGQLTKLVAGFQTLCLTVLHLNVTTIDPLVFYSISAKVEEGFQLCSVDGIATAIHHLLARIEEEASLCS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain