SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G17910 | AT | Annotation by Michelle Graham. TAIR10: transferases, transferring acyl groups | chr4:9951322-9953689 REVERSE LENGTH=434 | SoyBase | E_val: 7.00E-73 | ISS |
| GO:0006506 | GO-bp | Annotation by Michelle Graham. GO Biological Process: GPI anchor biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005789 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0016746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups | SoyBase | N/A | ISS |
| PTHR20661 | Panther | GPI-ANCHORED WALL TRANSFER PROTEIN 1 | JGI | ISS | |
| PF06423 | PFAM | GWT1 | JGI | ISS | |
| UniRef100_G7LH17 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GPI-anchored wall transfer protein n=1 Tax=Medicago truncatula RepID=G7LH17_MEDTR | SoyBase | E_val: 1.00E-114 | ISS |
| UniRef100_UPI00023380C5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023380C5 related cluster n=1 Tax=unknown RepID=UPI00023380C5 | SoyBase | E_val: 3.00E-134 | ISS |
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Glyma06g35220 not represented in the dataset |
Glyma06g35220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g095400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g35220.1 sequence type=CDS gene model=Glyma06g35220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCTTGGAGTTGGAGCATTTGTTTGGGCAAATTCACTAGTTTCTCGACAAGCTTGTAATATCACATCGGCTCCGCTAATCATCTTAGGATTTCTTCGTCTTGTTACTACAACCGGTGTGGATTATCAGGTACATGTGGGTGAATATGGTGTACATTGGAATTTCTTCTTCACACTTGCTGCTGTGTCTATCCTTACTTCCTTTATTAATATTTCCCCTCAATATTCTGGAGTTATTGGTTCACTTGTACTGTTCTTCTTGGTGCAAGGTTTAAATCATTACTTGCTTTCTAATGAAAGAGGAATGGATATCATAGGTCAAAACAAGGAGTGGATTTTTAGCATATTTGGCTATAATTTTGTTAGCAAGATACTGGGGAATGTACCTTCTTGGTGTTCATTTGGGAACTATCTTATCTTCGGAAGCCATTCCTCTGGATTTAGAAGTAGCAGATGGGTACAGATGAGGGTTTGGGTTTTCTCCATCGTGTTTTGGTTATTAACTGTGCTTCTAGACAGGCATGTTGAAAGAATTTCTCGGAGAATGTGCAACCTTCCATATGTTACTATGGTAGTGACTGACAATCTACAGCTGTTATCAATTCTAATGCTGGCTGATCTTGTTCCTGGAAGTAAAACTTGTCTAGATATCGCGTCATCAATCACGGCCGTTTTTATCTTGCTTGTTTATGCTTATGTTTTATCAATTGTAATTGGTATTGCAGATTATTTTGGTATTAAATTAAAATTTTGGTGA
>Glyma06g35220.1 sequence type=predicted peptide gene model=Glyma06g35220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLGVGAFVWANSLVSRQACNITSAPLIILGFLRLVTTTGVDYQVHVGEYGVHWNFFFTLAAVSILTSFINISPQYSGVIGSLVLFFLVQGLNHYLLSNERGMDIIGQNKEWIFSIFGYNFVSKILGNVPSWCSFGNYLIFGSHSSGFRSSRWVQMRVWVFSIVFWLLTVLLDRHVERISRRMCNLPYVTMVVTDNLQLLSILMLADLVPGSKTCLDIASSITAVFILLVYAYVLSIVIGIADYFGIKLKFW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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