SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma06g35010

Feature Type:gene_model
Chromosome:Gm06
Start:36783832
stop:36787676
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53190AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr1:19838072-19840003 FORWARD LENGTH=494 SoyBaseE_val: 2.00E-38ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR14155Panther RING FINGER PROTEIN 6/12/38 JGI ISS
PTHR14155:SF18Panther SUBFAMILY NOT NAMED JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_B9RXA6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RXA6_RICCO SoyBaseE_val: 5.00E-67ISS
UniRef100_I1KDP5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KDP5_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g234500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma06g35010.3   sequence type=transcript   gene model=Glyma06g35010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTCAATTCTGGTTCTTGCCACAAATTCTCTACTTTCCTTGTTATCCTTCTAATTCAGCGTGTATTCTTGGAAAGGGTTGATTTTAACTGAGGATTAGATTGCATCAACAAATATCTGTGATACGGATCAAATGAGTCAACAAGTCTATTTTCACTCCGAAAGTATCCATTTCAGTGGCACCAACATCCGTCTAGCTTCAGGAAATGGAATTAGTCTGGATTGCCATTATGTACTAGATGCTCATGACAGCTATTTGGATCAGCACTTACAACCATATGTACAAGCTTTCAGCGCTAATAGAAGTTCATCAGAGAATGCGAGAATTGGTCCACAGATATATCATCATTATCATGACACAAATGGCATCAGAAGTGGCCATAGATTTCCACGGAGATATCATGACACAAATGGCAGCAGAAGTGGCCATAGATTTCCATATAGATATCATGATACAAATGGCAGCAGAAGTGGCCACAGATTTCCACGGAGATATCATAACACAAATGGCAGCAGAAGTGGCCACAGATTTCCACAGAGATATCATGATACAACTGGCAGCAGAAGTGGCCAAAGATTTCCCCATCATCCTCCACAGCACCATAGCTTTCATCATCAAGTACAGCCAGCACAAGTAATCAGAGGCCACTCCTTCAACATTCATCCTCCTGTAACTGCACCTTCATATAGACTTCCAACAAATCCTTCACGTAATTCTTCAATCCTCATACATGATGCTTTTGAGATGGGCGCCAGGCATCCTGGCTTTGCACCATTTGCAGGTGCACGCATACACCAGTCTCATAGAGGCAACTTGCACGAGATGATAACTCTTATACATCAAAATCTTCCTCCTGCGGTCTTTTTCTCAGATGATGATGCTTCTTTACTGGTTGACCATCATACTGATATGTACTTGGACACTGAAGATATGTCTTATGAGGACCTTCTTGAATTAGGTGAGCAGATTGGCAACGCAAAATCAGGTTTATCAGAGAAAACAATTACAAGTCAAATGAAGACCAAAACTTACATACTACCTACTAATGCTACTAACTTGGAGGAGGCAGCTTCTGAGGAACAGGGAACTGATCTTTGCATAATATGCCAGGATGAATATAAGAACAAAGAGAATATTGGAATTCTTAGATGCGGGCACGAATATCACGCAGATTGTTTAAGGAGATGGTTACTTGAGAAAAATGTCTGCCCCATGTGCAAATCAGTAGCATTGACTCCTGGAGAAAAACAATGAGATTTACATGTCTCTCTGTTCCTACATGCACACTTCTTAGCTGCTACATTTTCTCGAACGAATTCATGTTTTTTGTTATGTATATGAACTTGTACATATACACAGTTTCATTGTCCAACTCAATTATTTGTTGGCACCACTGCACCAGAAGATTTATGTGTATATCAAGTTGTACAGACTTCTGTTGATATGTTAACTTTAGGCAATTACATTTTGCTTGTTTTTTGTTTCAGTTTTTTATGTGAATGGTTGAATGTGCCATGTCGAAGTATAGAATGAAACCTTTTTATTCGTATTGTTCA

>Glyma06g35010.2   sequence type=CDS   gene model=Glyma06g35010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCAACAAGTCTATTTTCACTCCGAAAGTATCCATTTCAGTGGCACCAACATCCGTCTAGCTTCAGGAAATGGAATTAGTCTGGATTGCCATTATGTACTAGATGCTCATGACAGCTATTTGGATCAGCACTTACAACCATATGTACAAGGTCATGCTTTGCCTTGGCATCTGTCTCTTCCAATGCCATATGTAGAAGCTTTCAGCGCTAATAGAAGTTCATCAGAGAATGCGAGAATTGGTCCACAGATATATCATCATTATCATGACACAAATGGCATCAGAAGTGGCCATAGATTTCCACGGAGATATCATGACACAAATGGCAGCAGAAGTGGCCATAGATTTCCATATAGATATCATGATACAAATGGCAGCAGAAGTGGCCACAGATTTCCACGGAGATATCATAACACAAATGGCAGCAGAAGTGGCCACAGATTTCCACAGAGATATCATGATACAACTGGCAGCAGAAGTGGCCAAAGATTTCCCCATCATCCTCCACAGCACCATAGCTTTCATCATCAAGTACAGCCAGCACAAGTAATCAGAGGCCACTCCTTCAACATTCATCCTCCTGTAACTGCACCTTCATATAGACTTCCAACAAATCCTTCACGTAATTCTTCAATCCTCATACATGATGCTTTTGAGATGGGCGCCAGGCATCCTGGCTTTGCACCATTTGCAGGTGCACGCATACACCAGTCTCATAGAGGCAACTTGCACGAGATGATAACTCTTATACATCAAAATCTTCCTCCTGCGGTCTTTTTCTCAGATGATGATGCTTCTTTACTGGTTGACCATCATACTGATATGTACTTGGACACTGAAGATATGTCTTATGAGGACCTTCTTGAATTAGGTGAGCAGATTGGCAACGCAAAATCAGGTTTATCAGAGAAAACAATTACAAGTCAAATGAAGACCAAAACTTACATACTACCTACTAATGCTACTAACTTGGAGGAGGCAGCTTCTGAGGAACAGGGAACTGATCTTTGCATAATATGCCAGGATGAATATAAGAACAAAGAGAATATTGGAATTCTTAGATGCGGGCACGAATATCACGCAGATTGTTTAAGGAGATGGTTACTTGAGAAAAATGTCTGCCCCATGTGCAAATCAGTAGCATTGACTCCTGGAGAAAAACAATGA

>Glyma06g35010.3   sequence type=CDS   gene model=Glyma06g35010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCAACAAGTCTATTTTCACTCCGAAAGTATCCATTTCAGTGGCACCAACATCCGTCTAGCTTCAGGAAATGGAATTAGTCTGGATTGCCATTATGTACTAGATGCTCATGACAGCTATTTGGATCAGCACTTACAACCATATGTACAAGCTTTCAGCGCTAATAGAAGTTCATCAGAGAATGCGAGAATTGGTCCACAGATATATCATCATTATCATGACACAAATGGCATCAGAAGTGGCCATAGATTTCCACGGAGATATCATGACACAAATGGCAGCAGAAGTGGCCATAGATTTCCATATAGATATCATGATACAAATGGCAGCAGAAGTGGCCACAGATTTCCACGGAGATATCATAACACAAATGGCAGCAGAAGTGGCCACAGATTTCCACAGAGATATCATGATACAACTGGCAGCAGAAGTGGCCAAAGATTTCCCCATCATCCTCCACAGCACCATAGCTTTCATCATCAAGTACAGCCAGCACAAGTAATCAGAGGCCACTCCTTCAACATTCATCCTCCTGTAACTGCACCTTCATATAGACTTCCAACAAATCCTTCACGTAATTCTTCAATCCTCATACATGATGCTTTTGAGATGGGCGCCAGGCATCCTGGCTTTGCACCATTTGCAGGTGCACGCATACACCAGTCTCATAGAGGCAACTTGCACGAGATGATAACTCTTATACATCAAAATCTTCCTCCTGCGGTCTTTTTCTCAGATGATGATGCTTCTTTACTGGTTGACCATCATACTGATATGTACTTGGACACTGAAGATATGTCTTATGAGGACCTTCTTGAATTAGGTGAGCAGATTGGCAACGCAAAATCAGGTTTATCAGAGAAAACAATTACAAGTCAAATGAAGACCAAAACTTACATACTACCTACTAATGCTACTAACTTGGAGGAGGCAGCTTCTGAGGAACAGGGAACTGATCTTTGCATAATATGCCAGGATGAATATAAGAACAAAGAGAATATTGGAATTCTTAGATGCGGGCACGAATATCACGCAGATTGTTTAAGGAGATGGTTACTTGAGAAAAATGTCTGCCCCATGTGCAAATCAGTAGCATTGACTCCTGGAGAAAAACAATGA

>Glyma06g35010.2   sequence type=predicted peptide   gene model=Glyma06g35010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQQVYFHSESIHFSGTNIRLASGNGISLDCHYVLDAHDSYLDQHLQPYVQGHALPWHLSLPMPYVEAFSANRSSSENARIGPQIYHHYHDTNGIRSGHRFPRRYHDTNGSRSGHRFPYRYHDTNGSRSGHRFPRRYHNTNGSRSGHRFPQRYHDTTGSRSGQRFPHHPPQHHSFHHQVQPAQVIRGHSFNIHPPVTAPSYRLPTNPSRNSSILIHDAFEMGARHPGFAPFAGARIHQSHRGNLHEMITLIHQNLPPAVFFSDDDASLLVDHHTDMYLDTEDMSYEDLLELGEQIGNAKSGLSEKTITSQMKTKTYILPTNATNLEEAASEEQGTDLCIICQDEYKNKENIGILRCGHEYHADCLRRWLLEKNVCPMCKSVALTPGEKQ*

>Glyma06g35010.3   sequence type=predicted peptide   gene model=Glyma06g35010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQQVYFHSESIHFSGTNIRLASGNGISLDCHYVLDAHDSYLDQHLQPYVQAFSANRSSSENARIGPQIYHHYHDTNGIRSGHRFPRRYHDTNGSRSGHRFPYRYHDTNGSRSGHRFPRRYHNTNGSRSGHRFPQRYHDTTGSRSGQRFPHHPPQHHSFHHQVQPAQVIRGHSFNIHPPVTAPSYRLPTNPSRNSSILIHDAFEMGARHPGFAPFAGARIHQSHRGNLHEMITLIHQNLPPAVFFSDDDASLLVDHHTDMYLDTEDMSYEDLLELGEQIGNAKSGLSEKTITSQMKTKTYILPTNATNLEEAASEEQGTDLCIICQDEYKNKENIGILRCGHEYHADCLRRWLLEKNVCPMCKSVALTPGEKQ*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo