Glyma06g34970 - SoyBase

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Report for Sequence Feature Glyma06g34970

Feature Type:	gene_model
Chromosome:	Gm06
Start:	36714102
stop:	36721003
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g34970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15070	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr3:5070472-5072344 REVERSE LENGTH=486	SoyBase	E_val: 5.00E-60	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR14155	Panther	RING FINGER PROTEIN 6/12/38	JGI		ISS
PTHR14155:SF18	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_B9RXA6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RXA6_RICCO	SoyBase	E_val: 2.00E-124	ISS
UniRef100_UPI000233A2A8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A2A8 related cluster n=1 Tax=unknown RepID=UPI000233A2A8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g34970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g34970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g234300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g34970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g34970

Limit To All Plant Sequences

>Glyma06g34970.2   sequence type=transcript   gene model=Glyma06g34970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAAGAGTTAATTATCTGTGCAGAGGCCAAACCAAGCATTTAATTTTTTATTTAGCGTTTTTGAATTAATTAAAAAAAAATAGAAGTCTCGCTTATTAAACTTTCTCTTACCCATTCGGACTTCTCTCTCTCCTTCCCTGCGTTTAATAGCTGTACTTTGCTTCTTTCTTTCTTTATCCGCTCCTTCATCTTCATCATCATCATCATCATCACCATCATCATTATCATTCTTCAATTCTCGCAAAAAAATTCGCTACTTTCGTTGCGATCGTTTCCAATTTCATGCGCTTTCTTGTGTGGGGTGGATTGGTGGTGGGTTGGTTGATTTTAGGTTTGGGAAAAAACGCGTGACTTTGATGATTACGAGATTTTCTTTACATGGTTTTAAGCTTTTAATGACTTTCCTAGTGACTATTTTATTCACTCTGGTTGGTACATTAGGATTAAATTGCATCAACAAGTCTCTATGATATGGATCAAATGAGTCAGCAAAGGCATGGCTATTTTCATTCCGAAAGTATCCATTTCAGAGGCAGCAACATCTCTCCGCCTAATGTATGCACACTCGTGACAGCCTCAGGGCACGGAACTAATCTAGATTCCCATTATTTACTAGATGCTTATGACAATGGTATGATGTATGGAATGACACAATACAATGGAGTTCAACATCAACATAATCTTGATATGGGTGTTCCAGCTGCTGCCAACATATATTATTCTAGCATGAATCCTTCATCTGGTACAGCTGCATCTCTAAATGCTGAAGTTAGGAGAGGAAATTATCAATATTTCAATGCCTCGGCTAGTTCTACAGTTGCTCCCCCTAACGCAAGACACACTGAAAATGGCATCCCCTCACTACCACATTGTACTTCGTGGAGCAGATCAGGCGAGTCTATGATGGTGCGTGACCCTAACCGTATAACTCAAGGAAATTATTTAAGTCAACACTTTCAACCAGCAGCTCCTCCTCCCTGGCTGGACCAGCAGTTGAATAGCAATAATAATGATGGTCATGCTTTGCCTTGGCATCAGTCTCTTCCAATGCCATATGTACAAGCTCCCAGTGCTAATGGAAGTTCATTAGAGAATGCAAGAATGGGTCCTCAGAGATATCATGATACAGCTGGCAGCAGAAGTGGCCACAGATTTCCTCATCCTCCTCTTGTCAACCCACACTATCATAGCTTTCATCATCAAACACAGCCTGTGCAAGAAATGAGAGGTCACTCCATCAACTTTCACCCCCCTCCTCCAGTAACTGCACCTTCATATAGAGTTCCAACAAATGCATCACGAAGTTCTTCGATCTTCATACAAGATGCTATTGAGATGGGTGCTAGGCATGTTGGCGCTGCACCATTTGCTGGTTCACGTATATACCGACCCCATAGGGGCAGCATGCATGAGACTACTCTTAGACATCGAAATCTTCCTCCCGTGACCTTTCTCCAAGTTGATGACGTTACTTTACTGGTTGACCATCATAATGATATGCGCTTGGACATTGAGGATATGTCTTATGAGGAGCTTCTTGCATTAGGGGAGCGGATTGGCAAAGTAAACACAGGTTTGTCAGAGGAAATGATTACAAGTCAAATGAAGACAAAATCTTATTTATTACTAGCTACTAATGCTATTAACTTGGAGGAGGCAGCTTCCGAGGAACAGGAAACTGATTCTTGCATAATATGCCAGGATGAATATAAAAACCAAGAAAAAATTGGTATTCTTCAATGCGGGCACGAATATCACGCAGACTGTTTAAAGAAATGGTTACTTGTGAAAAATGTGTGCCCCGTATGCAAATCAGAAGCATTGACTCCTGGAGAGAAGTGTGTATAAAATCTGAGATTTACATGTCTCTGTTCCTACATGCACACTTCTTAGCTACTACATTTTTCTAACGATTTCATGTTTTGTTGTGTATATGAACCCGTACATATAGACAGTCGCATTGTCCAACTCATTTATTTGTTGGCATCAAAACATTGTATGTATCAAGTTGTACAGACTTCTGTTGATATATTAACTTTAGGCAATTACATTGTTGCTATTTTTTATTTTCATTTTTTATATGGATGGTTGAATGTGCCATGTCCAAGTATAGAATGAAACTTTATGTTTTATTCATGTAGTTGACAGTTTTTTTTGCTGTTTATACTCTGTTTGTCTGTTATACATCTGAAGGTAGTTCAATCCTCTTTTTCATGTGGTATACAATGCAAGAATGATG

>Glyma06g34970.3   sequence type=transcript   gene model=Glyma06g34970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAAGAGTTAATTATCTGTGCAGAGGCCAAACCAAGCATTTAATTTTTTATTTAGCGTTTTTGAATTAATTAAAAAAAAATAGAAGTCTCGCTTATTAAACTTTCTCTTACCCATTCGGACTTCTCTCTCTCCTTCCCTGCGTTTAATAGCTGTACTTTGCTTCTTTCTTTCTTTATCCGCTCCTTCATCTTCATCATCATCATCATCATCACCATCATCATTATCATTCTTCAATTCTCGCAAAAAAATTCGCTACTTTCGTTGCGATCGTTTCCAATTTCATGCGCTTTCTTGTGTGGGGTGGATTGGTGGTGGGTTGGTTGATTTTAGGTTTGGGAAAAAACGCGTGACTTTGATGATTACGAGGATTAAATTGCATCAACAAGTCTCTATGATATGGATCAAATGAGTCAGCAAAGGCATGGCTATTTTCATTCCGAAAGTATCCATTTCAGAGGCAGCAACATCTCTCCGCCTAATGTATGCACACTCGTGACAGCCTCAGGGCACGGAACTAATCTAGATTCCCATTATTTACTAGATGCTTATGACAATGGTATGATGTATGGAATGACACAATACAATGGAGTTCAACATCAACATAATCTTGATATGGGTGTTCCAGCTGCTGCCAACATATATTATTCTAGCATGAATCCTTCATCTGGTACAGCTGCATCTCTAAATGCTGAAGTTAGGAGAGGAAATTATCAATATTTCAATGCCTCGGCTAGTTCTACAGTTGCTCCCCCTAACGCAAGACACACTGAAAATGGCATCCCCTCACTACCACATTGTACTTCGTGGAGCAGATCAGGCGAGTCTATGATGGTGCGTGACCCTAACCGTATAACTCAAGGAAATTATTTAAGTCAACACTTTCAACCAGCAGCTCCTCCTCCCTGGCTGGACCAGCAGTTGAATAGCAATAATAATGATGGTCATGCTTTGCCTTGGCATCAGTCTCTTCCAATGCCATATGTACAAGCTCCCAGTGCTAATGGAAGTTCATTAGAGAATGCAAGAATGGGTCCTCAGAGATATCATGATACAGCTGGCAGCAGAAGTGGCCACAGATTTCCTCATCCTCCTCTTGTCAACCCACACTATCATAGCTTTCATCATCAAACACAGCCTGTGCAAGAAATGAGAGGTCACTCCATCAACTTTCACCCCCCTCCTCCAGTAACTGCACCTTCATATAGAGTTCCAACAAATGCATCACGAAGTTCTTCGATCTTCATACAAGATGCTATTGAGATGGGTGCTAGGCATGTTGGCGCTGCACCATTTGCTGGTTCACGTATATACCGACCCCATAGGGGCAGCATGCATGAGACTACTCTTAGACATCGAAATCTTCCTCCCGTGACCTTTCTCCAAGTTGATGACGTTACTTTACTGGTTGACCATCATAATGATATGCGCTTGGACATTGAGGATATGTCTTATGAGGAGCTTCTTGCATTAGGGGAGCGGATTGGCAAAGTAAACACAGGTTTGTCAGAGGAAATGATTACAAGTCAAATGAAGACAAAATCTTATTTATTACTAGCTACTAATGCTATTAACTTGGAGGAGGCAGCTTCCGAGGAACAGGAAACTGATTCTTGCATAATATGCCAGGATGAATATAAAAACCAAGAAAAAATTGGTATTCTTCAATGCGGGCACGAATATCACGCAGACTGTTTAAAGAAATGGTTACTTGTGAAAAATGTGTGCCCCGTATGCAAATCAGAAGCATTGACTCCTGGAGAGAAGTGTGTATAAAATCTGAGATTTACATGTCTCTGTTCCTACATGCACACTTCTTAGCTACTACATTTTTCTAACGATTTCATGTTTTGTTGTGTATATGAACCCGTACATATAGACAGTCGCATTGTCCAACTCATTTATTTGTTGGCATCAAAACATTGTATGTATCAAGTTGTACAGACTTCTGTTGATATATTAACTTTAGGCAATTACATTGTTGCTATTTTTTATTTTCATTTTTTATATGGATGGTTGAATGTGCCATGTCCAAGTATAGAATGAAACTTTATGTTTTATTCATGTAGTTGACAGTTTTTTTTGCTGTTTATACTCTGTTTGTCTGTTATACATCTGAAGGTAGTTCAATCCTCTTTTTCATGTGGTATACAATGCAAGAATGATG

Coding sequences of Glyma06g34970

Limit To All Plant Sequences

>Glyma06g34970.1   sequence type=CDS   gene model=Glyma06g34970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCAAATGAGTCAGCAAAGGCATGGCTATTTTCATTCCGAAAGTATCCATTTCAGAGGCAGCAACATCTCTCCGCCTAATGTATGCACACTCGTGACAGCCTCAGGGCACGGAACTAATCTAGATTCCCATTATTTACTAGATGCTTATGACAATGGTATGATGTATGGAATGACACAATACAATGGAGTTCAACATCAACATAATCTTGATATGGGTGTTCCAGCTGCTGCCAACATATATTATTCTAGCATGAATCCTTCATCTGGTACAGCTGCATCTCTAAATGCTGAAGTTAGGAGAGGAAATTATCAATATTTCAATGCCTCGGCTAGTTCTACAGTTGCTCCCCCTAACGCAAGACACACTGAAAATGGCATCCCCTCACTACCACATTGTACTTCGTGGAGCAGATCAGGCGAGTCTATGATGGTGCGTGACCCTAACCGTATAACTCAAGGAAATTATTTAAGTCAACACTTTCAACCAGCAGCTCCTCCTCCCTGGCTGGACCAGCAGTTGAATAGCAATAATAATGATGGTCATGCTTTGCCTTGGCATCAGTCTCTTCCAATGCCATATGTACAAGCTCCCAGTGCTAATGGAAGTTCATTAGAGAATGCAAGAATGGGTCCTCAGAGATATCATGATACAGCTGGCAGCAGAAGTGGCCACAGATTTCCTCATCCTCCTCTTGTCAACCCACACTATCATAGCTTTCATCATCAAACACAGCCTGTGCAAGAAATGAGAGGTCACTCCATCAACTTTCACCCCCCTCCTCCAGTAACTGCACCTTCATATAGAGTTCCAACAAATGCATCACGAAGTTCTTCGATCTTCATACAAGATGCTATTGAGATGGGTGCTAGGCATGTTGGCGCTGCACCATTTGCTGGTTCACGTATATACCGACCCCATAGGGGCAGCATGCATGAGACTACTCTTAGACATCGAAATCTTCCTCCCGTGACCTTTCTCCAAGTTGATGTAATGTTTCCTATTTCTCTTTGTACAGCTTTTGGTACTCCATAG

>Glyma06g34970.2   sequence type=CDS   gene model=Glyma06g34970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCAAATGAGTCAGCAAAGGCATGGCTATTTTCATTCCGAAAGTATCCATTTCAGAGGCAGCAACATCTCTCCGCCTAATGTATGCACACTCGTGACAGCCTCAGGGCACGGAACTAATCTAGATTCCCATTATTTACTAGATGCTTATGACAATGGTATGATGTATGGAATGACACAATACAATGGAGTTCAACATCAACATAATCTTGATATGGGTGTTCCAGCTGCTGCCAACATATATTATTCTAGCATGAATCCTTCATCTGGTACAGCTGCATCTCTAAATGCTGAAGTTAGGAGAGGAAATTATCAATATTTCAATGCCTCGGCTAGTTCTACAGTTGCTCCCCCTAACGCAAGACACACTGAAAATGGCATCCCCTCACTACCACATTGTACTTCGTGGAGCAGATCAGGCGAGTCTATGATGGTGCGTGACCCTAACCGTATAACTCAAGGAAATTATTTAAGTCAACACTTTCAACCAGCAGCTCCTCCTCCCTGGCTGGACCAGCAGTTGAATAGCAATAATAATGATGGTCATGCTTTGCCTTGGCATCAGTCTCTTCCAATGCCATATGTACAAGCTCCCAGTGCTAATGGAAGTTCATTAGAGAATGCAAGAATGGGTCCTCAGAGATATCATGATACAGCTGGCAGCAGAAGTGGCCACAGATTTCCTCATCCTCCTCTTGTCAACCCACACTATCATAGCTTTCATCATCAAACACAGCCTGTGCAAGAAATGAGAGGTCACTCCATCAACTTTCACCCCCCTCCTCCAGTAACTGCACCTTCATATAGAGTTCCAACAAATGCATCACGAAGTTCTTCGATCTTCATACAAGATGCTATTGAGATGGGTGCTAGGCATGTTGGCGCTGCACCATTTGCTGGTTCACGTATATACCGACCCCATAGGGGCAGCATGCATGAGACTACTCTTAGACATCGAAATCTTCCTCCCGTGACCTTTCTCCAAGTTGATGACGTTACTTTACTGGTTGACCATCATAATGATATGCGCTTGGACATTGAGGATATGTCTTATGAGGAGCTTCTTGCATTAGGGGAGCGGATTGGCAAAGTAAACACAGGTTTGTCAGAGGAAATGATTACAAGTCAAATGAAGACAAAATCTTATTTATTACTAGCTACTAATGCTATTAACTTGGAGGAGGCAGCTTCCGAGGAACAGGAAACTGATTCTTGCATAATATGCCAGGATGAATATAAAAACCAAGAAAAAATTGGTATTCTTCAATGCGGGCACGAATATCACGCAGACTGTTTAAAGAAATGGTTACTTGTGAAAAATGTGTGCCCCGTATGCAAATCAGAAGCATTGACTCCTGGAGAGAAGTGTGTATAA

>Glyma06g34970.3   sequence type=CDS   gene model=Glyma06g34970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCAAATGAGTCAGCAAAGGCATGGCTATTTTCATTCCGAAAGTATCCATTTCAGAGGCAGCAACATCTCTCCGCCTAATGTATGCACACTCGTGACAGCCTCAGGGCACGGAACTAATCTAGATTCCCATTATTTACTAGATGCTTATGACAATGGTATGATGTATGGAATGACACAATACAATGGAGTTCAACATCAACATAATCTTGATATGGGTGTTCCAGCTGCTGCCAACATATATTATTCTAGCATGAATCCTTCATCTGGTACAGCTGCATCTCTAAATGCTGAAGTTAGGAGAGGAAATTATCAATATTTCAATGCCTCGGCTAGTTCTACAGTTGCTCCCCCTAACGCAAGACACACTGAAAATGGCATCCCCTCACTACCACATTGTACTTCGTGGAGCAGATCAGGCGAGTCTATGATGGTGCGTGACCCTAACCGTATAACTCAAGGAAATTATTTAAGTCAACACTTTCAACCAGCAGCTCCTCCTCCCTGGCTGGACCAGCAGTTGAATAGCAATAATAATGATGGTCATGCTTTGCCTTGGCATCAGTCTCTTCCAATGCCATATGTACAAGCTCCCAGTGCTAATGGAAGTTCATTAGAGAATGCAAGAATGGGTCCTCAGAGATATCATGATACAGCTGGCAGCAGAAGTGGCCACAGATTTCCTCATCCTCCTCTTGTCAACCCACACTATCATAGCTTTCATCATCAAACACAGCCTGTGCAAGAAATGAGAGGTCACTCCATCAACTTTCACCCCCCTCCTCCAGTAACTGCACCTTCATATAGAGTTCCAACAAATGCATCACGAAGTTCTTCGATCTTCATACAAGATGCTATTGAGATGGGTGCTAGGCATGTTGGCGCTGCACCATTTGCTGGTTCACGTATATACCGACCCCATAGGGGCAGCATGCATGAGACTACTCTTAGACATCGAAATCTTCCTCCCGTGACCTTTCTCCAAGTTGATGACGTTACTTTACTGGTTGACCATCATAATGATATGCGCTTGGACATTGAGGATATGTCTTATGAGGAGCTTCTTGCATTAGGGGAGCGGATTGGCAAAGTAAACACAGGTTTGTCAGAGGAAATGATTACAAGTCAAATGAAGACAAAATCTTATTTATTACTAGCTACTAATGCTATTAACTTGGAGGAGGCAGCTTCCGAGGAACAGGAAACTGATTCTTGCATAATATGCCAGGATGAATATAAAAACCAAGAAAAAATTGGTATTCTTCAATGCGGGCACGAATATCACGCAGACTGTTTAAAGAAATGGTTACTTGTGAAAAATGTGTGCCCCGTATGCAAATCAGAAGCATTGACTCCTGGAGAGAAGTGTGTATAA

Predicted protein sequences of Glyma06g34970

Limit To All Plant Sequences

>Glyma06g34970.1   sequence type=predicted peptide   gene model=Glyma06g34970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQMSQQRHGYFHSESIHFRGSNISPPNVCTLVTASGHGTNLDSHYLLDAYDNGMMYGMTQYNGVQHQHNLDMGVPAAANIYYSSMNPSSGTAASLNAEVRRGNYQYFNASASSTVAPPNARHTENGIPSLPHCTSWSRSGESMMVRDPNRITQGNYLSQHFQPAAPPPWLDQQLNSNNNDGHALPWHQSLPMPYVQAPSANGSSLENARMGPQRYHDTAGSRSGHRFPHPPLVNPHYHSFHHQTQPVQEMRGHSINFHPPPPVTAPSYRVPTNASRSSSIFIQDAIEMGARHVGAAPFAGSRIYRPHRGSMHETTLRHRNLPPVTFLQVDVMFPISLCTAFGTP*

>Glyma06g34970.2   sequence type=predicted peptide   gene model=Glyma06g34970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQMSQQRHGYFHSESIHFRGSNISPPNVCTLVTASGHGTNLDSHYLLDAYDNGMMYGMTQYNGVQHQHNLDMGVPAAANIYYSSMNPSSGTAASLNAEVRRGNYQYFNASASSTVAPPNARHTENGIPSLPHCTSWSRSGESMMVRDPNRITQGNYLSQHFQPAAPPPWLDQQLNSNNNDGHALPWHQSLPMPYVQAPSANGSSLENARMGPQRYHDTAGSRSGHRFPHPPLVNPHYHSFHHQTQPVQEMRGHSINFHPPPPVTAPSYRVPTNASRSSSIFIQDAIEMGARHVGAAPFAGSRIYRPHRGSMHETTLRHRNLPPVTFLQVDDVTLLVDHHNDMRLDIEDMSYEELLALGERIGKVNTGLSEEMITSQMKTKSYLLLATNAINLEEAASEEQETDSCIICQDEYKNQEKIGILQCGHEYHADCLKKWLLVKNVCPVCKSEALTPGEKCV*

>Glyma06g34970.3   sequence type=predicted peptide   gene model=Glyma06g34970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQMSQQRHGYFHSESIHFRGSNISPPNVCTLVTASGHGTNLDSHYLLDAYDNGMMYGMTQYNGVQHQHNLDMGVPAAANIYYSSMNPSSGTAASLNAEVRRGNYQYFNASASSTVAPPNARHTENGIPSLPHCTSWSRSGESMMVRDPNRITQGNYLSQHFQPAAPPPWLDQQLNSNNNDGHALPWHQSLPMPYVQAPSANGSSLENARMGPQRYHDTAGSRSGHRFPHPPLVNPHYHSFHHQTQPVQEMRGHSINFHPPPPVTAPSYRVPTNASRSSSIFIQDAIEMGARHVGAAPFAGSRIYRPHRGSMHETTLRHRNLPPVTFLQVDDVTLLVDHHNDMRLDIEDMSYEELLALGERIGKVNTGLSEEMITSQMKTKSYLLLATNAINLEEAASEEQETDSCIICQDEYKNQEKIGILQCGHEYHADCLKKWLLVKNVCPVCKSEALTPGEKCV*

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