Glyma06g34910 - SoyBase

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Report for Sequence Feature Glyma06g34910

Feature Type:	gene_model
Chromosome:	Gm06
Start:	36573222
stop:	36578749
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g34910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35290	AT	Annotation by Michelle Graham. TAIR10: glutamate receptor 2 \| chr4:16790290-16793461 FORWARD LENGTH=912	SoyBase	E_val: 7.00E-109	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006874	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular calcium ion homeostasis	SoyBase	N/A	ISS
GO:0006883	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular sodium ion homeostasis	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0030007	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular potassium ion homeostasis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004970	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ionotropic glutamate receptor activity	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005217	GO-mf	Annotation by Michelle Graham. GO Molecular Function: intracellular ligand-gated ion channel activity	SoyBase	N/A	ISS
GO:0005234	GO-mf	Annotation by Michelle Graham. GO Molecular Function: extracellular-glutamate-gated ion channel activity	SoyBase	N/A	ISS
KOG1052	KOG	Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits	JGI		ISS
PTHR18966	Panther	IONOTROPIC GLUTAMATE RECEPTOR-RELATED	JGI		ISS
PTHR18966:SF6	Panther	gb def: agcp9714 [anopheles gambiae str. pest]	JGI		ISS
PF00060	PFAM	Ligand-gated ion channel	JGI		ISS
PF00497	PFAM	Bacterial extracellular solute-binding proteins, family 3	JGI		ISS
PF01094	PFAM	Receptor family ligand binding region	JGI		ISS
UniRef100_E5GBG2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutamate-gated kainate-type ion channel receptor subunit glur5 n=1 Tax=Cucumis melo subsp. melo RepID=E5GBG2_CUCME	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A2A6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A2A6 related cluster n=1 Tax=unknown RepID=UPI000233A2A6	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g34910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g34910 not represented in the dataset	Glyma06g34910 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g34910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma06g34910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g34910

Limit To All Plant Sequences

>Glyma06g34910.1   sequence type=CDS   gene model=Glyma06g34910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCTGCCACAAACATGGGCAGAGACATCTTTAGTGGCTGAAGTATGTACCCAAAAGAGTATACCTCTGCTTTCTCAAGCAGATGCAACTCCAGAATGGGCAATGAAGAAGTGGCCCTTCCTGCTGCAATCCTCACCTAGCCAAATTATGCAGATGAAAGCTATTGCTGAAATTGTGAAGTCTTGGAAACTCTATAATATTACCATGATATGTGAAGATGGAGACTCATCATCTATTGAAGTTTTGTCTCAGCTCTCTGGAGCTCTTAAAGAAGTTGGGACAGAATTAAGCAATGTTATAGCAATTCTGCCTCTAGTTTCTTCTTCGTTGTCTCAACAACTTGAGAAGCTAAGAGAAGGACAATGCAGAGTCCTTATTGTCCATTTGTCCTTTCCTTTGGCACTACACCTGTTTGAAACTGCAAAAAGAATGGATATGATGGGGGAAGGTAATGTATGGATTACTACTGGTACCTTTACAAGCCTTGTTTATTCCTTGAATGCATCCACTATCTCCAATATGCAAGGGATTATTGGAGTCAAGAGCTATATCCAAAGTCTCTGGTACCAAAATGCAAACTTCTACCATAGATTTCGGAAAAATTTTAGCTCAGAGAATTTTGAAGAGTTTAATTATGAGCCTGGGATCTTTGCAGCCCAGGCTTATGATGTTGCATGGATTGTTGTTGATGCAATGAGGAAAACCAACCAAAAAGGGGGTCAACTTTTGCTAGATAAGATATTACTTAGTAATTTTACTGGCTTAAGTGGAACAATTCAGTTCACTGACAATAAATTAACTCCAGCACATACTTTTCAAATAATTAATGTGATAGGGAGGAGCTACAGGGAAATTGGGTTCTGGTCAGATGGACTTGGTTTCTCAAAATCTTTGGAACAAAATGCCTTTTACAGTTCAACAGTGAAGGAATTAGGAAAAGTAGTCAATCCAACATGTGCCATACGACTAAGAATTGGTGTCCCCTCCACATCAACATTCAAACAGTATGTCAATGTTATTCAAGAAGATTCTGGAAATGACACTTCCTTCAAGTTCGAGGGATTTGCTATAGATCTTTTCGAGGAAACAGTAAAAAAATTGCAAGGGATTTACCATGTGGAATATGACTATTTACCCTTTAATGGCACCACATATGATGAACTGGTGAAGAAAGTTTATTGGAAGGAATATGATGCAGTTGTTGGTGATGTCGCAATAGTGTCCACGCGTTATGAATATGTTTCATTCACTCAGCCCTATACTGATCCAGGAGTGGTGATGATTGTTCCTGTTAAATCAAAAACAGGCAACAGAGCATGGCTATTTTTGAAGCCTTTCACGAAGCTCATGTGGGTTCTAATATTGGTCATCATTGTCTACAATGGTTTTGTTGTATGGTTGATTGAAAGAAACCACTGCGCTGAACTTAAGGGCCCTATTCTGCACCAAACCACAACTATGTTGTGGTTGGCTTTCTGTTCTTTGTTCTCTGTGAATGGGGACAGATTACATAGCAATTTATCAAGGGTGGCAACGGTGGTCTGGCTTTTTGTGGCTCTAATCATTACACAGACTTACACTGCTAGCCTTGCCAGCATGTTGACTGTTGAACAGTTTGAACCAACTGTAGACAGCATTCAGCAGCTAAAGAACAGCAATGCCATGGTAGGATATGATAGAGGATCCTACTTGAAAATATATCTCCAGGATGTATTGGGCATCAAAGCTGAAAACATAAAACAATTTGACTCACAGAAGAGCTATGCTGATGCCCTAAGAAACAAAGAAATAGCAGCTGCCTTCCTTGATATCCCTGAGGCCAAAATTTTCCTTGCAAAGAACTGTAAAGGGTTTGTTCAAGCAGGACCTACATTCAAAATTGGAGGATATGGATTTGTATTTCCAAAGGGTTCTCCGTTGCTTCATAGTGTAAACCAAGCCCTACTGAACATATCTGAAAATGGCACACTACGTAATCTAGAAAACAATATGCTTGCATCAGAGGAATGTGAAGACATAACTGACCCAAATGTAGAAACTACTAGTCTTAGCCCAGCAAGCTTCATGGTACTCTTCATCTTAACTGGAGGCACTTCAACAATTGTTCTATTAATTTACATATTCTCTGTAAATCATATATACCCTGGACAGAGAACAATGTGGAGTCTAATGATGGCTGTGATTCAAAGTTGGAGATCTCAAAAGAGACTGTTTTCAAGAAGAGTTCACAATGTTGCAGAAAGTCCTTTAAACTCTTCCAACATTTCTAATTTGCCAGCTTTAGCTTAA

Predicted protein sequences of Glyma06g34910

Limit To All Plant Sequences

>Glyma06g34910.1   sequence type=predicted peptide   gene model=Glyma06g34910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLPQTWAETSLVAEVCTQKSIPLLSQADATPEWAMKKWPFLLQSSPSQIMQMKAIAEIVKSWKLYNITMICEDGDSSSIEVLSQLSGALKEVGTELSNVIAILPLVSSSLSQQLEKLREGQCRVLIVHLSFPLALHLFETAKRMDMMGEGNVWITTGTFTSLVYSLNASTISNMQGIIGVKSYIQSLWYQNANFYHRFRKNFSSENFEEFNYEPGIFAAQAYDVAWIVVDAMRKTNQKGGQLLLDKILLSNFTGLSGTIQFTDNKLTPAHTFQIINVIGRSYREIGFWSDGLGFSKSLEQNAFYSSTVKELGKVVNPTCAIRLRIGVPSTSTFKQYVNVIQEDSGNDTSFKFEGFAIDLFEETVKKLQGIYHVEYDYLPFNGTTYDELVKKVYWKEYDAVVGDVAIVSTRYEYVSFTQPYTDPGVVMIVPVKSKTGNRAWLFLKPFTKLMWVLILVIIVYNGFVVWLIERNHCAELKGPILHQTTTMLWLAFCSLFSVNGDRLHSNLSRVATVVWLFVALIITQTYTASLASMLTVEQFEPTVDSIQQLKNSNAMVGYDRGSYLKIYLQDVLGIKAENIKQFDSQKSYADALRNKEIAAAFLDIPEAKIFLAKNCKGFVQAGPTFKIGGYGFVFPKGSPLLHSVNQALLNISENGTLRNLENNMLASEECEDITDPNVETTSLSPASFMVLFILTGGTSTIVLLIYIFSVNHIYPGQRTMWSLMMAVIQSWRSQKRLFSRRVHNVAESPLNSSNISNLPALA*

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