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Report for Sequence Feature Glyma06g34387

Feature Type:gene_model
Chromosome:Gm06
Start:35782952
stop:35787523
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g34387
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G15050AT Annotation by Michelle Graham. TAIR10: IQ-domain 10 | chr3:5066879-5067892 REVERSE LENGTH=259 SoyBaseE_val: 1.00E-81ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
PTHR10699Panther FAMILY NOT NAMED JGI ISS
PTHR10699:SF9Panther CALMODULIN BINDING JGI ISS
UniRef100_B9S0P1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9S0P1_RICCO SoyBaseE_val: 1.00E-87ISS
UniRef100_I3SVQ2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Lotus japonicus RepID=I3SVQ2_LOTJA SoyBaseE_val: 2.00E-142ISS

Expression Patterns of Glyma06g34387
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g34387 not represented in the dataset
Glyma06g34387 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g34387 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g232400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g34387
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g34387
>Glyma06g34387.2   sequence type=transcript   gene model=Glyma06g34387   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTAGCTTCCGTTACCTTTCTGGAGACTCCTAATCTTCCAATAGATTAAATATCTTCTTCAGTGTGGTTGGTTTGTCACTTTGCTATGAACTCTCTATGGTTTGTCTTAAATGTTCTACGTGTTATATAACTGTCCACCGTTTATCCTCTCAAAGCAACCCACTTGTTTCTTTTGTCAGCTTTTGCTTCTGTGCCTGGTAAAGAAATTATGAGTCCAAAGAAATGGTTTAAGGCGATTATTAGATTGAGGAAACCGAAGGAAGATAAATCGAAACTAGCAAAGGTGCAATCTACCCCTGAAAAATCAAATGAGTCCTCCGAGGAGAAACAAGAAGACACTCTTGAAGAGGCACTTAGCATTCCTAGTGAAGGTTTGGCGGTAGAAAGGACAGTTCCCACGAGGTTGATAGAAGATATTGCTGCTACTCGGATTCAAAATGCATTTCGTGCATTTTTGGCAAGAAGAACATTGCACCATCTAAGAGGAGCAGTGAAATTTGAGGCTTTGATTCAAGATCACATGGCCAGAGAACAAACAGTAACTGCTCTAAACTACATACATACTTGGAGCAGAATGCAGGACCAGATTAAAGCTCGCAGACTCTATATGATAACAGAAGCCAGGATTAAGCAAAAGAGATTGGAAAACCAGTTAAAACTTGAGGCCAAGATTCATGAGCTCCAGGTGGAATGGAGTGGAGGCTCTGAAACAATGGAAGAGATACTTTCCAGGTTACATCAGCGTGAAGAAGCAGCGGTTAAACGAGAGCGAGCTATGGCATATGCCTACTCTCATCAGTGGAGGCCCAATTGCAGCCAGTACTTGGGCCATGCTACTTACAGCCTAGGGAAGGAGAGCTGGGGTTGGAGCTGGAAGGAGAGGTGGGTAGCAGCCCGTCCTTGGGAAATTCGGGTTCGTTTTCAGGGCCCCATGACAAAGAAAACCAATGGCCAGCCACAGAGAAGCAAAGTAGACAAAAAAGACCACAATTATAATAATAATAATAATAATAATAATAATAATAGAAAAGTGCCCTTGTCTAAGCCTGAGTTGTCAAACGGAAAAGAAAACAACAATATTCCAGAGCTGTCTTAGAACAACACTAAATAAACCACGCTGTCACCTGTGTCAGCTATGGTGATTAATCAATTACTTGACGTGTCCCTTGTATGGCACATCCTTTTTATTTATCGTATTTCTTGTCCTTCATTTTACATTTTTTTTTCATATTTGGCTTGAAGAAAGTATATAACTGATGTGTGTACATTAAATTAGGAGACTTGTAATTTTGTATTTTCATGATCAGTTAGAAACATGGATGATCTTCGCATCTTCCCAATGCCATGTCTTTTTTAATGGTTGAAACATGAGAATGGTCTACTATCCTCTGCAATTCAAGGCATGACTTTAAATTGTATCGCAGTAGTGGTTGCGGTTTCAATGTGTTTTTTT
Coding sequences of Glyma06g34387
>Glyma06g34387.1   sequence type=CDS   gene model=Glyma06g34387   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCCAAAGAAATGGTTTAAGGCGATTATTAGATTGAGGAAACCGAAGGAAGATAAATCGAAACTAGCAAAGGTGCAATCTACCCCTGAAAAATCAAATGAGTCCTCCGAGGAGAAACAAGAAGACACTCTTGAAGAGGCACTTAGCATTCCTAGTGAAGGTTTGGCGGTAGAAAGGACAGTTCCCACGAGGTTGATAGAAGATATTGCTGCTACTCGGATTCAAAATGCATTTCGTGCATTTTTGCAGGCAAGAAGAACATTGCACCATCTAAGAGGAGCAGTGAAATTTGAGGCTTTGATTCAAGATCACATGGCCAGAGAACAAACAGTAACTGCTCTAAACTACATACATACTTGGAGCAGAATGCAGGACCAGATTAAAGCTCGCAGACTCTATATGATAACAGAAGCCAGGATTAAGCAAAAGAGATTGGAAAACCAGTTAAAACTTGAGGCCAAGATTCATGAGCTCCAGGTGGAATGGAGTGGAGGCTCTGAAACAATGGAAGAGATACTTTCCAGGTTACATCAGCGTGAAGAAGCAGCGGTTAAACGAGAGCGAGCTATGGCATATGCCTACTCTCATCAGTGGAGGCCCAATTGCAGCCAGTACTTGGGCCATGCTACTTACAGCCTAGGGAAGGAGAGCTGGGGTTGGAGCTGGAAGGAGAGGTGGGTAGCAGCCCGTCCTTGGGAAATTCGGGTTCGTTTTCAGGGCCCCATGACAAAGAAAACCAATGGCCAGCCACAGAGAAGCAAAGTAGACAAAAAAGACCACAATTATAATAATAATAATAATAATAATAATAATAATAGAAAAGTGCCCTTGTCTAAGCCTGAGTTGTCAAACGGAAAAGAAAACAACAATATTCCAGAGCTGTCTTAG

>Glyma06g34387.2   sequence type=CDS   gene model=Glyma06g34387   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCCAAAGAAATGGTTTAAGGCGATTATTAGATTGAGGAAACCGAAGGAAGATAAATCGAAACTAGCAAAGGTGCAATCTACCCCTGAAAAATCAAATGAGTCCTCCGAGGAGAAACAAGAAGACACTCTTGAAGAGGCACTTAGCATTCCTAGTGAAGGTTTGGCGGTAGAAAGGACAGTTCCCACGAGGTTGATAGAAGATATTGCTGCTACTCGGATTCAAAATGCATTTCGTGCATTTTTGGCAAGAAGAACATTGCACCATCTAAGAGGAGCAGTGAAATTTGAGGCTTTGATTCAAGATCACATGGCCAGAGAACAAACAGTAACTGCTCTAAACTACATACATACTTGGAGCAGAATGCAGGACCAGATTAAAGCTCGCAGACTCTATATGATAACAGAAGCCAGGATTAAGCAAAAGAGATTGGAAAACCAGTTAAAACTTGAGGCCAAGATTCATGAGCTCCAGGTGGAATGGAGTGGAGGCTCTGAAACAATGGAAGAGATACTTTCCAGGTTACATCAGCGTGAAGAAGCAGCGGTTAAACGAGAGCGAGCTATGGCATATGCCTACTCTCATCAGTGGAGGCCCAATTGCAGCCAGTACTTGGGCCATGCTACTTACAGCCTAGGGAAGGAGAGCTGGGGTTGGAGCTGGAAGGAGAGGTGGGTAGCAGCCCGTCCTTGGGAAATTCGGGTTCGTTTTCAGGGCCCCATGACAAAGAAAACCAATGGCCAGCCACAGAGAAGCAAAGTAGACAAAAAAGACCACAATTATAATAATAATAATAATAATAATAATAATAATAGAAAAGTGCCCTTGTCTAAGCCTGAGTTGTCAAACGGAAAAGAAAACAACAATATTCCAGAGCTGTCTTAG
Predicted protein sequences of Glyma06g34387
>Glyma06g34387.1   sequence type=predicted peptide   gene model=Glyma06g34387   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPKKWFKAIIRLRKPKEDKSKLAKVQSTPEKSNESSEEKQEDTLEEALSIPSEGLAVERTVPTRLIEDIAATRIQNAFRAFLQARRTLHHLRGAVKFEALIQDHMAREQTVTALNYIHTWSRMQDQIKARRLYMITEARIKQKRLENQLKLEAKIHELQVEWSGGSETMEEILSRLHQREEAAVKRERAMAYAYSHQWRPNCSQYLGHATYSLGKESWGWSWKERWVAARPWEIRVRFQGPMTKKTNGQPQRSKVDKKDHNYNNNNNNNNNNRKVPLSKPELSNGKENNNIPELS*

>Glyma06g34387.2   sequence type=predicted peptide   gene model=Glyma06g34387   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPKKWFKAIIRLRKPKEDKSKLAKVQSTPEKSNESSEEKQEDTLEEALSIPSEGLAVERTVPTRLIEDIAATRIQNAFRAFLARRTLHHLRGAVKFEALIQDHMAREQTVTALNYIHTWSRMQDQIKARRLYMITEARIKQKRLENQLKLEAKIHELQVEWSGGSETMEEILSRLHQREEAAVKRERAMAYAYSHQWRPNCSQYLGHATYSLGKESWGWSWKERWVAARPWEIRVRFQGPMTKKTNGQPQRSKVDKKDHNYNNNNNNNNNNRKVPLSKPELSNGKENNNIPELS*






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