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Report for Sequence Feature Glyma06g34210

Feature Type:gene_model
Chromosome:Gm06
Start:35397562
stop:35398728
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g34210
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G45600AT Annotation by Michelle Graham. TAIR10: YEATS family protein | chr5:18488059-18489666 FORWARD LENGTH=268 SoyBaseE_val: 8.00E-45ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0048510GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of timing of transition from vegetative to reproductive phase SoyBaseN/AISS
GO:0090239GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of histone H4 acetylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
PTHR23195Panther YEATS DOMAIN JGI ISS
PTHR23195:SF15Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_B9SXM8UniRef Annotation by Michelle Graham. Most informative UniRef hit: YEATS domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SXM8_RICCO SoyBaseE_val: 7.00E-47ISS
UniRef100_I1J8L7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1J8L7_SOYBN SoyBaseE_val: 5.00E-51ISS

Expression Patterns of Glyma06g34210
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g34210 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g231700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g34210
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g34210
>Glyma06g34210.1   sequence type=CDS   gene model=Glyma06g34210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCCTTTTTGCTGGTTACTTGGATTTGGGACTTGGGAGATTGCATTTTTTTAATAACATATGTTAATGGATTATGTGGTTATAGGTATCAACATTTGAAATTATATCCAGAAGATGAATATGGCCCCCAGTCTATGAAGAAACCCGTGGTTGTTGAATCTTATAACGAGATTGTTTTCCCTGAACCCTCAGAGGTTTTTCTTGCACGTGTACAAAATCATCCTGCCGTTAATGTGCCTAGGCTTCCTGCTGGTTTGAATTTATCATGTTCTGGTACTTTCCTTTCAATGTTATTCCTATTCCTACTAAGAGGTGACACCAAAGATCATCCTCTAACTCAATGGTTCTTAAACTTCTCTGAGGATGATGAGATCTTAAAACTTGCAGCAGCTCGCCAGCAGCAACAATTTCATCAAGTAGAAGCTAGGCAACAAAGTTCTATGAATCCAGCTTCCTCTTGA
Predicted protein sequences of Glyma06g34210
>Glyma06g34210.1   sequence type=predicted peptide   gene model=Glyma06g34210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSFLLVTWIWDLGDCIFLITYVNGLCGYRYQHLKLYPEDEYGPQSMKKPVVVESYNEIVFPEPSEVFLARVQNHPAVNVPRLPAGLNLSCSGTFLSMLFLFLLRGDTKDHPLTQWFLNFSEDDEILKLAAARQQQQFHQVEARQQSSMNPASS*






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