Glyma06g33940 - SoyBase

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Report for Sequence Feature Glyma06g33940

Feature Type:	gene_model
Chromosome:	Gm06
Start:	35144337
stop:	35150350
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g33940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15010	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr3:5052844-5054058 FORWARD LENGTH=404	SoyBase	E_val: 1.00E-119	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0008219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell death	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG4205	KOG	RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1	JGI		ISS
PTHR24011	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24011:SF217	Panther		JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_I1KDM3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDM3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LKA4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3G15010 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LKA4_ARATH	SoyBase	E_val: 6.00E-117	ISS

Expression Patterns of Glyma06g33940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g33940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g231000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g33940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g33940

Limit To All Plant Sequences

>Glyma06g33940.3   sequence type=transcript   gene model=Glyma06g33940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATTTTGTTCTTTTCTACCTCTCTTCACTCTCAGTCTCAGTCTCCACTTTCTGAGAAGAGCGCCAAATTAGGGTTAGATTATCAGGGTTTAACCGTTCCTCCTCTTCCTCTACCATAATCAACAACCTCTTCCCAATCCCAATGGATCCAACCAAGAAGCGCAAGCTCGACGAGAACGGCTTCAACAACAACGACTCTTCCGACCCCCTCAAGCTCTCCCCCTCCGAAGTCCGCAAGCTCATCGAGCGCTTCACCTCCGACCAGCTCCTCGACATCCTCCAGGACGCGGTGGCGCGCCACCTCGACGTCCTTGCCGCCGTGCGCGCCGTCGCGGACCCTGACGTCTCCCAGCGCAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCGCTCTTCTCCACCTTCGGCGACCTCGAGGAGGCCGTTGTCATCCTCGACAAGGCCACTGGCAAGTCCAAGGGATACGGCTTCGTCACCTTCCGCCACGTCGACGGCGCGCTTCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGCCGCGTGACGGTCACGCAGCTCGCCGCCGCCGGGAACTCCGCGTCGAACGTCAACCCCGCTGACGTAGCTCTCCGTAAGATCTACGTCGCCAACGTGCCGCCGGACCTGCCCGCGGACAAGCTTCTCGCGCACTTCTCCGTGTACGGCGAAATCGAAGAAGGTCCGTTAGGGTTTGATAAACAAACAGGAAAGTCGAAAGGGTTTGCTTTATTTGTTTATAAGTCTCCCGAGGGTGCTCAGGCCGCATTGATAGATCCTGTGAAGACTGTGGAAGGGAGGCAGTTGAGTTGTAAGTTGGCGATTACTGATGGGAAGCAGGGAAAGCGGGTAGGGCCGGACTCGGCCCAGGCCCATCACGGGAATGTTCAGCACGGGCATGGAGATGGAGTGGGGGCGGGAATGGGGATGCCTCCTAATGCGGGGTCCGGGCCTGGGCAGTATGGTGGACCTGGACAGTATGGGCCCCCGGTTGGGATGGGTTCTTATGGTGGGTTTGGCGGACAGCCTCCGATGGGCAATCATAACCATCCTCTTAATTCGACGAATCCTGTGCCGGGTTCTTTGGCAGGTGCTGGTGGGTATGGTGGTGGGATGGGTGGGCCATATGGTGGGTACGGTGGTGGACCTGGACCGGGGTCGACTGGCTTTGGCGGTGCTGGTGGGATGGGAGGAGGTGGTGGAGGTGTTGGTGGTGGCGCTGGTGGCGGGCTTGGTGGTGCTGGTGGTGGTAGTTCTATGTATAGATTGCCGGGTTCGGGCGGAATGCCTGCTGGTGGTACTGGAGGGTATCCGGATAGTGGACACTATGGTTTATCAGCTTCCTCTGGGTACCAGAATCAGCATCACCCTCCTTCTGGAACTTCACCTATGCCTAGGGTTCCGCCTGGTTCGATGTATCCCAATATGCCCCCTTACTACTGAAGAGGGTTTAGTTTGTTTTGCTGGTTGATGACGAAGGCCTTTGCATCATCTTCAGTGTTTTGGCTTGAGATTGTTGATTGCTAATATGGAGACTGGACGAGAAACATACTTTGTCTAACACTCTTTACTTGAGCTCGACATTATGTTTATAATGATAAAGAAGATTGATGGACATCTTTGCTTCCTTCTGCTTCTTGTACCCAAATCCTTTTAGTATTTAGAGTTGAAAAATAATGCATTCTTAGATTTAATGAGACGATGAAAGGGCAACCTGGTGCTTTTAAACTCTTGCCTTGACATGATCAAGTGTCGTACCCTTTATGGATCCATGTAGGCAGCCTTAACTTGCATTTGCAAGAGGCTGATTCCGGAGTCAAACTTGTGACCCTTGATTTCATACTGAAACAAGGCTCTCCTAAATCTGAGATTATAAATACTCAATTTTATGTTAGTTTGATCTTGGATATGGATTAATTCAGTGATTCTTTTTGTTTTCTCTGGAACTGAGCCTTGATTGCCCCACAATTTGTTATCTGGATTTCTTTTTTCCTTTTGCTTCTATACCCTTCTCTCCTAATTATGCACGTTTGTGGAATTTGTCTGATGTTTAGTTGCTTTTTAATTTTGGCTGTATTCTATTCTACGATATTTCACTCTTTTGGGTGATGCTTGCTTTACCAAATCTTCTTATGTAGGTTGTGCTTCTTAGAGATCGATTCTTTTTGTAAAATTGAACTTTTTGTTAACCCCGCGAGAGGATAATAATGACATGTTAAAAACTAAAGCTGGATTTACTCTGGTCAAATTTCATGTTCTCTGTAGTTGTTGCATGAGGATATCGATGCTTTGAATAACTTTATCTTATTAAACATCATTTGCGTTCAATTGACAAATGGTATCTCAACCATATTAATCTTAACCCTTATGCAGATTTTGTTTTTAGTTTTTAATAATTAATTTGGCTACAGATCAGAATATTTATCTATATATAGTCGGTACCTAAATCAGAATAAATTAGTGCTATTATACTAATCACTGTCATTGGCTGTATTTCTGGTAAAATGTTCTTCCACTTCATCTTGGTTTTGTACACTGGTTGAACGTGAGCTTAAGATGTGGTGGAGCATAACCGAGTAATTAAAGTAAGAAAAGGTGGCCTCGTATCAGAGTCTTCGAACATGGTTTCCATGGCAGAATTGACTTGGAAGCTTAAACCAAGATGACGGACCCCGATGCCACTGACTTAACGCAACTTTGGTGCTGCACTTGTATCTATGCATGTGTCGACTTGTACAGTGAAGTCAGTTTTGTGATAAGGTTTAAAAATGTTATTTTTCTTAATATGTTACAAGACATTAAGAGAATTAATGAGAGTACAGCCACATTTATGAT

Coding sequences of Glyma06g33940

Limit To All Plant Sequences

>Glyma06g33940.2   sequence type=CDS   gene model=Glyma06g33940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCAACCAAGAAGCGCAAGCTCGACGAGAACGGCTTCAACAACAACGACTCTTCCGACCCCCTCAAGCTCTCCCCCTCCGAAGTCCGCAAGCTCATCGAGCGCTTCACCTCCGACCAGCTCCTCGACATCCTCCAGGACGCGGTGGCGCGCCACCTCGACGTCCTTGCCGCCGTGCGCGCCGTCGCGGACCCTGACGTCTCCCAGCGCAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCGCTCTTCTCCACCTTCGGCGACCTCGAGGAGGCCGTTGTCATCCTCGACAAGGCCACTGGCAAGTCCAAGGGATACGGCTTCGTCACCTTCCGCCACGTCGACGGCGCGCTTCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGCCGCGTGACGGTCACGCAGCTCGCCGCCGCCGGGAACTCCGCGTCGAACGTCAACCCCGCTGACGTAGCTCTCCGTAAGATCTACGTCGCCAACGTGCCGCCGGACCTGCCCGCGGACAAGCTTCTCGCGCACTTCTCCGTGTACGGCGAAATCGAAGAAGGTCCGTTAGGGTTTGATAAACAAACAGGAAAGTCGAAAGGGTTTGCTTTATTTGTTTATAAGTCTCCCGAGGGTGCTCAGGCCGCATTGATAGATCCTGTGAAGACTGTGGAAGGGAGGCAGTTGAGTTGTAAGTTGGCGATTACTGATGGGAAGCAGGGAAAGCGGGTAGGGCCGGACTCGGCCCAGGCCCATCACGGGAATGTTCAGCACGGGCATGGAGATGGAGTGGGGGCGGGAATGGGGATGCCTCCTAATGCGGGGTCCGGGCCTGGGCAGTATGGTGGACCTGGACAGTATGGGCCCCCGGTTGGGATGGGTTCTTATGGTGGGTTTGGCGGACAGCCTCCGATGGGCAATCATAACCATCCTCTTAATTCGACGAATCCTGTGCCGGGTTCTTTGGCAGGTGCTGGTGGGTATGGTGGTGGGATGGGTGGGCCATATGGTGGGTACGGTGGTGGACCTGGACCGGGGTCGACTGGCTTTGGCGGTGCTGGTGGGATGGGAGGAGGTGGTGGAGGTGTTGGTGGTGGCGCTGGTGGCGGGCTTGGTGGTGCTGGTGGTGGTAGTTCTATGTATAGATTGCCGGGTTCGGGCGGAATGCCTGCTGGTGGTACTGGAGGGTATCCGGATAGTGGACACTATGGTTTATCAGCTTCCTCTGGGTACCAGAATCAGCATCACCCTCCTTCTGGAACTTCACCTATGCCTAGGGTTCCGCCTGGTTCGATGTATCCCAATATGCCCCCTTACTACTGA

>Glyma06g33940.3   sequence type=CDS   gene model=Glyma06g33940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCAACCAAGAAGCGCAAGCTCGACGAGAACGGCTTCAACAACAACGACTCTTCCGACCCCCTCAAGCTCTCCCCCTCCGAAGTCCGCAAGCTCATCGAGCGCTTCACCTCCGACCAGCTCCTCGACATCCTCCAGGACGCGGTGGCGCGCCACCTCGACGTCCTTGCCGCCGTGCGCGCCGTCGCGGACCCTGACGTCTCCCAGCGCAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCGCTCTTCTCCACCTTCGGCGACCTCGAGGAGGCCGTTGTCATCCTCGACAAGGCCACTGGCAAGTCCAAGGGATACGGCTTCGTCACCTTCCGCCACGTCGACGGCGCGCTTCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGCCGCGTGACGGTCACGCAGCTCGCCGCCGCCGGGAACTCCGCGTCGAACGTCAACCCCGCTGACGTAGCTCTCCGTAAGATCTACGTCGCCAACGTGCCGCCGGACCTGCCCGCGGACAAGCTTCTCGCGCACTTCTCCGTGTACGGCGAAATCGAAGAAGGTCCGTTAGGGTTTGATAAACAAACAGGAAAGTCGAAAGGGTTTGCTTTATTTGTTTATAAGTCTCCCGAGGGTGCTCAGGCCGCATTGATAGATCCTGTGAAGACTGTGGAAGGGAGGCAGTTGAGTTGTAAGTTGGCGATTACTGATGGGAAGCAGGGAAAGCGGGTAGGGCCGGACTCGGCCCAGGCCCATCACGGGAATGTTCAGCACGGGCATGGAGATGGAGTGGGGGCGGGAATGGGGATGCCTCCTAATGCGGGGTCCGGGCCTGGGCAGTATGGTGGACCTGGACAGTATGGGCCCCCGGTTGGGATGGGTTCTTATGGTGGGTTTGGCGGACAGCCTCCGATGGGCAATCATAACCATCCTCTTAATTCGACGAATCCTGTGCCGGGTTCTTTGGCAGGTGCTGGTGGGTATGGTGGTGGGATGGGTGGGCCATATGGTGGGTACGGTGGTGGACCTGGACCGGGGTCGACTGGCTTTGGCGGTGCTGGTGGGATGGGAGGAGGTGGTGGAGGTGTTGGTGGTGGCGCTGGTGGCGGGCTTGGTGGTGCTGGTGGTGGTAGTTCTATGTATAGATTGCCGGGTTCGGGCGGAATGCCTGCTGGTGGTACTGGAGGGTATCCGGATAGTGGACACTATGGTTTATCAGCTTCCTCTGGGTACCAGAATCAGCATCACCCTCCTTCTGGAACTTCACCTATGCCTAGGGTTCCGCCTGGTTCGATGTATCCCAATATGCCCCCTTACTACTGA

Predicted protein sequences of Glyma06g33940

Limit To All Plant Sequences

>Glyma06g33940.2   sequence type=predicted peptide   gene model=Glyma06g33940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPTKKRKLDENGFNNNDSSDPLKLSPSEVRKLIERFTSDQLLDILQDAVARHLDVLAAVRAVADPDVSQRKLFIRGLGWDTTTDGLRSLFSTFGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSASNVNPADVALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKSPEGAQAALIDPVKTVEGRQLSCKLAITDGKQGKRVGPDSAQAHHGNVQHGHGDGVGAGMGMPPNAGSGPGQYGGPGQYGPPVGMGSYGGFGGQPPMGNHNHPLNSTNPVPGSLAGAGGYGGGMGGPYGGYGGGPGPGSTGFGGAGGMGGGGGGVGGGAGGGLGGAGGGSSMYRLPGSGGMPAGGTGGYPDSGHYGLSASSGYQNQHHPPSGTSPMPRVPPGSMYPNMPPYY*

>Glyma06g33940.3   sequence type=predicted peptide   gene model=Glyma06g33940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPTKKRKLDENGFNNNDSSDPLKLSPSEVRKLIERFTSDQLLDILQDAVARHLDVLAAVRAVADPDVSQRKLFIRGLGWDTTTDGLRSLFSTFGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSASNVNPADVALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKSPEGAQAALIDPVKTVEGRQLSCKLAITDGKQGKRVGPDSAQAHHGNVQHGHGDGVGAGMGMPPNAGSGPGQYGGPGQYGPPVGMGSYGGFGGQPPMGNHNHPLNSTNPVPGSLAGAGGYGGGMGGPYGGYGGGPGPGSTGFGGAGGMGGGGGGVGGGAGGGLGGAGGGSSMYRLPGSGGMPAGGTGGYPDSGHYGLSASSGYQNQHHPPSGTSPMPRVPPGSMYPNMPPYY*

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