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Report for Sequence Feature Glyma06g33920

Feature Type:gene_model
Chromosome:Gm06
Start:35116166
stop:35120258
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g33920
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G16670AT Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr1:5697846-5699492 FORWARD LENGTH=390 SoyBaseE_val: 5.00E-167ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0045087GO-bp Annotation by Michelle Graham. GO Biological Process: innate immune response SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_B9SVD1UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SVD1_RICCO SoyBaseE_val: 8.00E-177ISS
UniRef100_UPI000233A12EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A12E related cluster n=1 Tax=unknown RepID=UPI000233A12E SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g33920
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g33920 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g230800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g33920
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g33920
>Glyma06g33920.1   sequence type=CDS   gene model=Glyma06g33920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTAGTTGCTTTCATCTTTTCAGAAAGAAAGGATCTTCCTCAGGCACACAGTTGACCGGAGTTGATTTAGATGTTTCAGAAATTCAGAATGTCAACATCTACACTTACAGAGAATTGCGAATTGCCACTGAAGGTTTTAGCAATGCAAACAAGATAGGGCAGGGAGGTTTTGGAGTAGTCTATAAGGGAAAGCTGAGAAACGGTTCTTTGGCAGCTATAAAGGTTTTATCGGCTGAATCAAGACAAGGGGTCCGGGAGTTCTTGACAGAAATCAAGGTGATCTCTAGTATAGAGCATGAGAATCTAGTCAAGTTACATGGATGTTGTGTGGAAGACAACCACAGAATTTTGGTATATGGCTATCTTGAGAATAACAGCCTAGCACAAACACTTATTGGTTCAGGCCATAGCAGCATCCAATTAAGTTGGCCTGTAAGGAGGAACATTTGCATAGGTGTTGCTCGGGGCCTTGCATTCCTTCATGAGGAGGTTCGGCCACACATTATCCATAGAGACATAAAAGCAAGCAATGTACTACTTGATAAAGACCTCCAGCCCAAAATTTCAGATTTTGGCCTTGCAAAGCTTATTCCACCAAACCTGACCCATATTAGTACTCGTGTTGCTGGAACAGTTGGGTATCTAGCACCTGAATATGCAATCCGAAATCAAGTGACTAGAAAATCAGATGTCTATAGTTTTGGAGTTCTACTATTAGAGATTGTTAGTAGGAGGCCTAACACAAACAGACGTTTGCCTGTTGAAGAACAGTATCTTCTCACAAGGGCTTGGGATTTGTATGAGAGTGGGGAGGCAGAAAAATTGGTGGATGCTTTTCTAGAAGGAGACTTCAATATTGAGGAGGCAGTCAGATTTTGTAAGATTGGTCTCCTTTGCACGCAGGATTCTCCGCAGCTCCGGCCCTCTATGTCCAGTGTGCTTGAGATGCTTTTAGGTGAAAAAGACGTGAATGAGGAGAATGTGACAAAACCGGGCATGATATTTGAATTTGTGGAAGCCAAAAGTGCAGGTAAACAAAAATGCAAAGCTGAAGTGGATAGTAAATCTTTGTTGGCTGAAGGGAAGCAAGATGATTCATCTTCATCAGGAACCATGAGCTCTTTTGCTACCATGACCTTCACAGCAATTTATGATAGAAGCGATTAG
Predicted protein sequences of Glyma06g33920
>Glyma06g33920.1   sequence type=predicted peptide   gene model=Glyma06g33920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSCFHLFRKKGSSSGTQLTGVDLDVSEIQNVNIYTYRELRIATEGFSNANKIGQGGFGVVYKGKLRNGSLAAIKVLSAESRQGVREFLTEIKVISSIEHENLVKLHGCCVEDNHRILVYGYLENNSLAQTLIGSGHSSIQLSWPVRRNICIGVARGLAFLHEEVRPHIIHRDIKASNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTVGYLAPEYAIRNQVTRKSDVYSFGVLLLEIVSRRPNTNRRLPVEEQYLLTRAWDLYESGEAEKLVDAFLEGDFNIEEAVRFCKIGLLCTQDSPQLRPSMSSVLEMLLGEKDVNEENVTKPGMIFEFVEAKSAGKQKCKAEVDSKSLLAEGKQDDSSSSGTMSSFATMTFTAIYDRSD*






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