SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G53300 | AT | Annotation by Michelle Graham. TAIR10: tetratricopetide-repeat thioredoxin-like 1 | chr1:19879726-19882375 FORWARD LENGTH=699 | SoyBase | E_val: 0 | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009789 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| KOG0907 | KOG | Thioredoxin | JGI | ISS | |
| PTHR22904 | Panther | CHAPERONE BINDING PROTEIN | JGI | ISS | |
| PF00085 | PFAM | Thioredoxin | JGI | ISS | |
| PF00515 | PFAM | Tetratricopeptide repeat | JGI | ISS | |
| UniRef100_B9SE65 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Small glutamine-rich tetratricopeptide repeat-containing protein A, putative n=1 Tax=Ricinus communis RepID=B9SE65_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KDL9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDL9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g33850 not represented in the dataset |
Glyma06g33850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g230400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g33850.1 sequence type=CDS gene model=Glyma06g33850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCACATTCCGGGAAGAAACCCGTGTCGTCCGAGTTAGGGCTCACCGAGCGGTTCCGCGACTCACTGAGTTGCTCCGACGACAACAAACCCGATTTCCGAGAACTCGATTTGAGTTCGCCGGTTTCAACATTGCGGCCACGTCAGCACCACAGTGCGCCCACCACAACGAGTAGCAGTAGCACGAGCACTAGCAGCGGCTCGACCGGGTCCGGTTCGGGTCGGAACGGAAACAATAACGCGGTTTCGAAGAGATCTCATTCTGGTGAGTTGTCTGGGTCGAGCGAGACCAATAGTCCGACCCGGGTTTCGAAACCGGGTCACCGGAGATCCAATTCGGGTCAAAGCCAGAGATCTCCTTCGTCGTCCTCCTCCGCTGTCAATTCTCCGCCGCTGAACGTTCTCCCGGCCGGGAACATCTGCCCGTCCGGAAGGGTTCTCAAGGCGGCGACCGCGGCCGTGGCGCCAAGCCGGAGCTCCAGGTCGGATGTTCTGGGCTCCGGCACGGGGAATTACGGCCACGGGAGCATAATGCGAGGTGGAAAAGGTGGCGGCGGCGGCGGCGGTGGTGGTGGTGATGTGAGGATCGCTGGCGAATCGGCGAAGGGCGTGGATCCGGAGGAGGTGAAGAGGATTGGGAATGAAGAGTATAAGAGAGGGCACTTTGTTGAGGCGTTGTGTTTGTATGATCGAGCAATTGCAATGTCTCCCGGCAATGCCGCTTACCGGAGCAACCGTGCGGCGGCGTTGACCGGTTTAGGACGGTTGCCGGAGGCGGTGAAGGCGTGTGAGGAGGCTGTGGGGTTGGATCCTAATTATGGGAGGGCGCATCAGCGCTTGGCAATGTTGTTTCTCAGGTTAGGACAGGTTGAGGATGCTAGGAAGCACCTTTGTTATCCTGGCCTGCAGCTGGATCCTGCTGAGTTGCAGAAGTTGCAAATTGTGGAAAAGCATATTAACAAATGTGGTGATGTACGGAGGATACGAGATTGGAAAGGTGTACTGAGGGAGGTTGATGCTGCTGTTGCTGCTGGAGCAGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTCTCAAGCTACACCAGATTGATGATGCTGAATCATGTATATCATGGATTCCCAAAAGCAAGCCACATCCTGGTTCCTTATCACAGGCAAGATTTTTTGGGATGTTTTCTGAGGCTTATTGCTTCTTCGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAACGCAGTTACAACTGCTGAGAAAGCTAGTCAGATTGACCCCCGAAACGTTGAAGTTGCTGTTTTGCTCAACAATGTGAGGATGGTTGCTAGAGCTCGATTGCGTGGTAATGATCTTTTTAAATCAGAAAGGTTCACTGAGGCATGCTCGGCATATGGGGAGGGTTTGAGGCTCGACCCTTCAAACTCTGTCCTCTATTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTGCAATCAAGCTTTACACATCCAACCTGATTACACTAAAGCCATTCTTCGAAGGGCTGCCTCAAATAGCAAGTTAGAAAGGTGGGAAGAAGCAGTAACAGATTATGAGCTTTTGCGGAGAGAACTACCAGATGACAATGAAGTTGCCGAAAATCTGTTTCATGCGCAAGTAGCATTAAAGAAATCACGTGGGGAAGAAGTGCATAATTTAAAGTTTGGTGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTTAGAGCGGCAATATCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAACTGCGTCAAACTTGCAATGTAAGCAGATATCGCCATTGGTGAATACACTATGCAGTCGTAATCCATCTATTAACTTCCTCAAGGTGAATATTCAAACAAGCCCCGCAGTCGCTGCTGCTGAGAATGTTAGGGTTGTACCAACCTTCAAGATCTATAAAAATGGCAGTCAAGTGAAGGAAATTATATGTCCTAGTCATGATATGTTGGAACACTCCATTAGGCATTACAGCTTGTAG
>Glyma06g33850.1 sequence type=predicted peptide gene model=Glyma06g33850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSHSGKKPVSSELGLTERFRDSLSCSDDNKPDFRELDLSSPVSTLRPRQHHSAPTTTSSSSTSTSSGSTGSGSGRNGNNNAVSKRSHSGELSGSSETNSPTRVSKPGHRRSNSGQSQRSPSSSSSAVNSPPLNVLPAGNICPSGRVLKAATAAVAPSRSSRSDVLGSGTGNYGHGSIMRGGKGGGGGGGGGGDVRIAGESAKGVDPEEVKRIGNEEYKRGHFVEALCLYDRAIAMSPGNAAYRSNRAAALTGLGRLPEAVKACEEAVGLDPNYGRAHQRLAMLFLRLGQVEDARKHLCYPGLQLDPAELQKLQIVEKHINKCGDVRRIRDWKGVLREVDAAVAAGADSCVQLFMCRAEALLKLHQIDDAESCISWIPKSKPHPGSLSQARFFGMFSEAYCFFVRAQIEMAFGRFENAVTTAEKASQIDPRNVEVAVLLNNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALHIQPDYTKAILRRAASNSKLERWEEAVTDYELLRRELPDDNEVAENLFHAQVALKKSRGEEVHNLKFGGEVEDISGLEQFRAAISLPGVSVVHFETASNLQCKQISPLVNTLCSRNPSINFLKVNIQTSPAVAAAENVRVVPTFKIYKNGSQVKEIICPSHDMLEHSIRHYSL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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