Glyma06g33725 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g33725

Feature Type:	gene_model
Chromosome:	Gm06
Start:	34801287
stop:	34809717
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g33725

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_G7KJI9	UniRef	Annotation by Michelle Graham. Best UniRef hit: PHD-finger family protein expressed n=1 Tax=Medicago truncatula RepID=G7KJI9_MEDTR	SoyBase	E_val: 2.00E-19	ISS

Expression Patterns of Glyma06g33725

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g33725 not represented in the dataset	Glyma06g33725 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g33725 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g230100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g33725

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g33725

Limit To All Plant Sequences

>Glyma06g33725.2   sequence type=transcript   gene model=Glyma06g33725   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCTTTCACGTTAATCCCTACTATCATCATAATTCCTCTTCCCCTTAAATCTCTTCAAAGAAAATCTTATTTCCCTTAAACCTCTTCAAAGAAAAATTGACGGCGCGAAATCAAGTGCGTAAGCGTAAGCGACTTCACCTATCGTTTTTTTTTTTTTGGCCGAGTTACTTCACCTTTCGTTTTCACTTCCCAATTTCTTCTCTGCGAATTTTGGCGCCTAAAAAACACCCAATTCTGCATCCATTCCTTCCTTCATACTCGCTGTTCTTGCCTCTGATTTTGCACCTTCTCCAATTTTCTCAGCGGCCTCATTCTTGCAAAACTGATTTCAGTGATTAGGAGGTTTCAAAATAGAAATGACTGGAATGATAGATCGTTTAGAGCTTTCCGTCAGAGGCAGTTTAACTACCATGACCAAGTTCCTCATAAGATTGGTGGAGGCAAAACAGGTAATAAATATATGAAGACAAAATGATGGGTTAAGAAGACCCATGGAATCATCTAAACATTATATTGATTCTCCATGGCCAGCTGTGACATATGATATAATGGCACCATCACCTGTGGTGGGGTCTAGTTTCAAGCTTGTATATCAGCAAATCTTAGCCTCACAGGCACAATTATTGGAAGGCAAAGAATATCATAAGATTCAAAATCCTACTGTAGAAACAAATGATCATCCACATGCCCCTGCAGATTCTAATATTTACACCCAACCAGAAGATGTGAGTTCTGATTCTGCAGCAAGAGAACTAAGACCACCAAAAGTGGGATACTGTAAAATTTGTGAGGTTCATCTACCCTATTGCAAAACATTGGAAATGCATAACCAAGAAAATAGTCATCAAAGAATGTTGAAACTATATGAGGAAATACAGAGACTAAAAACTTCAGGTTCCAGTACTAACACCCAAACTACAGATGAATGTTCTAAAGCTGAACAAAGGATAGATATTCTCACCCATCAGTCAGGGACAACTCAGCTGTCTCAGGTAGCTGTTTGTCTTCAGTGTGGCAATGCAGGGTTTCCAGAGACACTTGTGTTTTGCAACAAGTGTCAGGTATATGCACTTCATAGGCATTTGGTGCTTTGGTTAGAGTGGAATGCTTAAGCTTTAAACTGGCAATTTATATCATCAGAACCTTTTTTTAGCACAAGGATTGTGAATTGGATTTTTTTTGGTTAAAAATACCTGGTAAAATGAGATTTAGGTTTTGGTATTACTGTCCTTTGATTCTTTTCTTTTCTGATTTTCCCTTCTCTGAATTTTTTTAAACTCCACTCCCCTGCCAAAAAAACTACAAGCAAAAGATTGCAAGAGTTATCTAGTTTCTAGCACTTTTGTTCTCTCCAAGATCCAAAGAGTCCCATTATCTTCATGAACATGAGAAAAAAATGAAATAAAATAAAATTTATATAATTAAAAATATATGCTCCAGGAAAGAAAGCTGAATACCTGTCTTTGTTCAAAATCTGACAACTGCAGAGCCTTGGCCCCAAAAACTAAAACCAAACAGTATTTACCATCTTGCGTGACCTAAGATGTAACCACATCACCAGAGAGGGTTAATATAGGAATGACCAGAGTCTAATTAATAAACATAATTCTCTAACTAACATGCTAGGTAGCCTCTCAGATCAACAGAGATTGTTGC

>Glyma06g33725.3   sequence type=transcript   gene model=Glyma06g33725   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCTTTCACGTTAATCCCTACTATCATCATAATTCCTCTTCCCCTTAAATCTCTTCAAAGAAAATCTTATTTCCCTTAAACCTCTTCAAAGAAAAATTGACGGCGCGAAATCAAGTGCGTAAGCGTAAGCGACTTCACCTATCGTTTTTTTTTTTTTGGCCGAGTTACTTCACCTTTCGTTTTCACTTCCCAATTTCTTCTCTGCGAATTTTGGCGCCTAAAAAACACCCAATTCTGCATCCATTCCTTCCTTCATACTCGCTGTTCTTGCCTCTGATTTTGCACCTTCTCCAATTTTCTCAGCGGCCTCATTCTTGCAAAACTGATTTCAGTGATTAGGAGGTTTCAAAATAGAAATGACTGGAATGATAGATCGTTTAGAGCTTTCCGTCAGAGGCAGTTTAACTACCATGACCAAGTTCCTCATAAGATTGGTGGAGGCAAAACAGGTAATAAATATATGAAGACAAAATGATGGGTTAAGAAGACCCATGGAATCATCTAAACATTATATTGATTCTCCATGGCCAGCTGTGACATATGATATAATGGCACCATCACCTGTGGTGGGGTCTAGTTTCAAGCTTGTATATCAGCAAATCTTAGCCTCACAGGCACAATTATTGGAAGGCAAAGAATATCATAAGATTCAAAATCCTACTGTAGAAACAAATGATCATCCACATGCCCCTGCAGATTCTAATATTTACACCCAACCAGAAGATGTGAGTTCTGATTCTGCAGCAAGAGAACTAAGACCACCAAAAGTGGGATACTGTAAAATTTGTGAGGTTCATCTACCCTATTGCAAAACATTGGAAATGCATAACCAAGAAAATAGTCATCAAAGAATGTTGAAACTATATGAGGAAATACAGAGACTAAAAACTTCAGGTTCCAGTACTAACACCCAAACTACAGATGAATGTTCTAAAGCTGAACAAAGGATAGATATTCTCACCCATCAGTCAGGGACAACTCAGCTGTCTCAGGTAGCTGTTTGTCTTCAGTGTGGCAATGCAGGGTTTCCAGAGACACTTGTGTTTTGCAACAAGTGTCAGGTATATGCACTTCATAGAACTGTCTTTGGTTGAACTTCTCTAAATTTTCTTGAGAATTTGGAATCTGTCCTTCTCTAATTAGTAATTCTTTATGTAGACTCAACTTTTTTCGATGGTTCTTCCCATTATTATGTGCTTCCACATTGTTTTGACTACCCACAATAACCTCACAAATTTTACAATATACCCCTGGTTGTGGCTATTCCTACCATAGGACCTATTGTAAAATTTGTGAGGAATAGCCACAACTTGGGGTATATTGTAAAATTTGTCAAGTCAGTGTGGGTAGTTAAAACAACATGGAAGCACATAATAATGGGAAGAACCATCGAATAAAGTTGAGGCTACATGAGGAATTAAGTGAGACCAATAATTGAGATGGACAGATCCCAAATTCTCAAGAGAATTTTTAGAAGCAAATATGCTATGAAGTTTTGATGATGCCAAAGAAACGCGCTTCTCATGTTTGATCCAAGACTCCAAGAAATCCAAGACTCCAAGAAATCCAAGATAAATGATGAAAGAGAGAATCGCGAGTGATCTTCAATTGTAATATCTTTCTTTGAAAGAGAGAATTCTTCTTCTTCCTCTTCTTATTCAAAGAGATTGGTTAAGAGACCGAGAGTTGTAAGGAATTATGAACACAAGGGAAGGGTTGTTCCTGTGTGGTTCAGACTTTGTAAAAAACATTTTACAAGATAGTGGAACTCTCAAGCGGGTTGCTTGGGGACTGGACGTAGGCACAGGGCGTGGCCGAACCAGTATAAAAACTGAGTTT

Coding sequences of Glyma06g33725

Limit To All Plant Sequences

>Glyma06g33725.1   sequence type=CDS   gene model=Glyma06g33725   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCATCTAAACATTATATTGATTCTCCATGGCCAGCTGTGACATATGATATAATGGCACCATCACCTGTGGTGGGGTCTAGTTTCAAGCTTGTATATCAGCAAATCTTAGCCTCACAGGCACAATTATTGGAAGGCAAAGAATATCATAAGATTCAAAATCCTACTGTAGAAACAAATGATCATCCACATGCCCCTGCAGATTCTAATATTTACACCCAACCAGAAGATGTGAGTTCTGATTCTGCAGCAAGAGAACTAAGACCACCAAAAGTGGGATACTGTAAAATTTGTGAGGTTCATCTACCCTATTGCAAAACATTGGAAATGCATAACCAAGAAAATAGTCATCAAAGAATGTTGAAACTATATGAGGAAATACAGAGACTAAAAACTTCAGGTTCCAGTACTAACACCCAAACTACAGATGAATGTTCTAAAGCTGAACAAAGGATAGATATTCTCACCCATCAGTCAGGGACAACTCAGCTGTCTCAGGTAGCTGTTTGTCTTCAGTGTGGCAATGCAGGGTTTCCAGAGACACTTGTGTTTTGCAACAAGTGTCAGGTATATGCACTTCATAGAAGTGAGGGCGAGCCCTGGTGCAGCGGTAAAGTTGTGCCTTGGTGA

>Glyma06g33725.2   sequence type=CDS   gene model=Glyma06g33725   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCATCTAAACATTATATTGATTCTCCATGGCCAGCTGTGACATATGATATAATGGCACCATCACCTGTGGTGGGGTCTAGTTTCAAGCTTGTATATCAGCAAATCTTAGCCTCACAGGCACAATTATTGGAAGGCAAAGAATATCATAAGATTCAAAATCCTACTGTAGAAACAAATGATCATCCACATGCCCCTGCAGATTCTAATATTTACACCCAACCAGAAGATGTGAGTTCTGATTCTGCAGCAAGAGAACTAAGACCACCAAAAGTGGGATACTGTAAAATTTGTGAGGTTCATCTACCCTATTGCAAAACATTGGAAATGCATAACCAAGAAAATAGTCATCAAAGAATGTTGAAACTATATGAGGAAATACAGAGACTAAAAACTTCAGGTTCCAGTACTAACACCCAAACTACAGATGAATGTTCTAAAGCTGAACAAAGGATAGATATTCTCACCCATCAGTCAGGGACAACTCAGCTGTCTCAGGTAGCTGTTTGTCTTCAGTGTGGCAATGCAGGGTTTCCAGAGACACTTGTGTTTTGCAACAAGTGTCAGGTATATGCACTTCATAGGCATTTGGTGCTTTGGTTAGAGTGGAATGCTTAA

>Glyma06g33725.3   sequence type=CDS   gene model=Glyma06g33725   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCATCTAAACATTATATTGATTCTCCATGGCCAGCTGTGACATATGATATAATGGCACCATCACCTGTGGTGGGGTCTAGTTTCAAGCTTGTATATCAGCAAATCTTAGCCTCACAGGCACAATTATTGGAAGGCAAAGAATATCATAAGATTCAAAATCCTACTGTAGAAACAAATGATCATCCACATGCCCCTGCAGATTCTAATATTTACACCCAACCAGAAGATGTGAGTTCTGATTCTGCAGCAAGAGAACTAAGACCACCAAAAGTGGGATACTGTAAAATTTGTGAGGTTCATCTACCCTATTGCAAAACATTGGAAATGCATAACCAAGAAAATAGTCATCAAAGAATGTTGAAACTATATGAGGAAATACAGAGACTAAAAACTTCAGGTTCCAGTACTAACACCCAAACTACAGATGAATGTTCTAAAGCTGAACAAAGGATAGATATTCTCACCCATCAGTCAGGGACAACTCAGCTGTCTCAGGTAGCTGTTTGTCTTCAGTGTGGCAATGCAGGGTTTCCAGAGACACTTGTGTTTTGCAACAAGTGTCAGGTATATGCACTTCATAGAACTGTCTTTGGTTGA

Predicted protein sequences of Glyma06g33725

Limit To All Plant Sequences

>Glyma06g33725.1   sequence type=predicted peptide   gene model=Glyma06g33725   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESSKHYIDSPWPAVTYDIMAPSPVVGSSFKLVYQQILASQAQLLEGKEYHKIQNPTVETNDHPHAPADSNIYTQPEDVSSDSAARELRPPKVGYCKICEVHLPYCKTLEMHNQENSHQRMLKLYEEIQRLKTSGSSTNTQTTDECSKAEQRIDILTHQSGTTQLSQVAVCLQCGNAGFPETLVFCNKCQVYALHRSEGEPWCSGKVVPW*

>Glyma06g33725.2   sequence type=predicted peptide   gene model=Glyma06g33725   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESSKHYIDSPWPAVTYDIMAPSPVVGSSFKLVYQQILASQAQLLEGKEYHKIQNPTVETNDHPHAPADSNIYTQPEDVSSDSAARELRPPKVGYCKICEVHLPYCKTLEMHNQENSHQRMLKLYEEIQRLKTSGSSTNTQTTDECSKAEQRIDILTHQSGTTQLSQVAVCLQCGNAGFPETLVFCNKCQVYALHRHLVLWLEWNA*

>Glyma06g33725.3   sequence type=predicted peptide   gene model=Glyma06g33725   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESSKHYIDSPWPAVTYDIMAPSPVVGSSFKLVYQQILASQAQLLEGKEYHKIQNPTVETNDHPHAPADSNIYTQPEDVSSDSAARELRPPKVGYCKICEVHLPYCKTLEMHNQENSHQRMLKLYEEIQRLKTSGSSTNTQTTDECSKAEQRIDILTHQSGTTQLSQVAVCLQCGNAGFPETLVFCNKCQVYALHRTVFG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain