SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G14940 | AT | Annotation by Michelle Graham. TAIR10: phosphoenolpyruvate carboxylase 3 | chr3:5025584-5029476 FORWARD LENGTH=968 | SoyBase | E_val: 0 | ISS |
| GO:0006099 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle | SoyBase | N/A | ISS |
| GO:0006826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion transport | SoyBase | N/A | ISS |
| GO:0010106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0015977 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbon fixation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008964 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoenolpyruvate carboxylase activity | SoyBase | N/A | ISS |
| PF00311 | PFAM | Phosphoenolpyruvate carboxylase | JGI | ISS | |
| UniRef100_I1KDL4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Phosphoenolpyruvate carboxylase 2 n=1 Tax=Glycine max RepID=I1KDL4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KDL4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphoenolpyruvate carboxylase 2 n=1 Tax=Glycine max RepID=I1KDL4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g33380 not represented in the dataset |
Glyma06g33380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g229900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g33380.1 sequence type=CDS gene model=Glyma06g33380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAACAGGAACTTGGAAAAGATGGCATCCATCGATGCTCAGCTTCGGCTGTTGGTTCCAGCCAAAGTGAGTGAGGATGATAAACTGGTTGAGTATGATGCTTTGCTCTTGGATCGATTCCTTGATATTCTTCAGGATTTACATGGGGAGGATCTGAAAGAAACGGTTCAAGAGGTGTATGAGCTTTCTGCTGAGTATGAAGGGAAACATGACCCAAAGAAACTGGAGGAACTTGGAAATCTGATAACTAGTTTGGATGCTGGAGATTCCATTGTAGTTGCCAAGTCCTTTTCCCACATGCTTAACTTGGCCAACTTAGCCGAAGAGGTCCAAATTGCACACAGCCGAAGGAACAAGTTGAAGAAAGGTGATTTTGCTGATGAAAACAATGCCACCACTGAATCAGATATTGAAGAAACTCTCAAGAAACTTGTTGGGGATATGAAGAAGTCTCCTCAGGAAGTTTTTAATGCACTGAAAAACCAGACTGTTGATCTGGTTCTTACTGCTCATCCAACTCAATCTGTCCGTAGGTCTTTGCTTCAAAAACATGGAAGGATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGGGAGATCCAAGCTGCATTTCGTACTGATGAAATCAGGAGGACCCCTCCAACCCCACAAGATGAGATGAGAGCAGGGATGAGTTACTTCCATGAAACAATTTGGAAGGGTGTACCAACATTTCTACGTCGTGTTGATACAGCTTTGAAGAATATAGGGATCAATGAGCGTGTCCCTTATAATGCTCCTCTCATTCAATTTTCCTCTTGGATGGGTGGAGATCGTGATGGCAATCCAAGAGTAACTCCAGAAGTGACAAGAGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTGTACTACTCCCAGATAGAGAATCTTATGTTTGAACTGTCAATGTGGCGCTGCAATGATGAGCTACGTGTTCGTGCAGATGAACTTAACAGGTCTTCCAAGAAAAATTCAGTGGCAAAACACTACATAGAATTCTGGAAAGTCATTCCTCCAAATGAACCATATCGTGTGCTACTGGGTGAAGTAAGGAATAGGCTTTACCATACTCGAGAGCGCTCGCGCCATTTGCTAGCTCATGGCTACTCTGACATTCCAGAGGAAGAAACATTCACCAATGTTGAGGAGTTCTTGGAACCCCTTGAGCTCTGTTACAGATCACTCTGTGCTTGTGGCGATCGAGCAATTGCTGATGGAAGCCTTCTAGATTTCTTGAGACAAGTCTCTACTTTTGGACTCTCCCTAGTGAGGCTCGACATAAGGCAAGAGTCAGACCGCCACACCGATGTCTTAGATGCCATCACCAAGCATTTGGAAATAGGCTCATACCAGGAATGGTCCGAGGAAAAACGGCAGCAATGGCTTTTATCCGAGTTGAGTGGCAAAAGGCCCCTATTTGGCCCTGACCTTCCCCAAACAGAAGAAATCAGAGACGTTTTGGACACATTCCATGTCATAGCAGAGCTTCCACCAGACAACTTTGGAGCATACATCATCTCAATGGCAACTGCACCTTCTGATGTGCTTGCAGTTGAGCTTCTGCAGCGAGAATGCCATGTCAAGCATCCACTAAGAGTTGTGCCATTGTTTGAGAAGCTAGCTGATCTGGAAGCAGCACCAGCTGCATTGGCACGGTTGTTCTCCGTAGACTGGTACAGAAACAGGATCAATGGGAAGCAGGAAGTGATGATTGGCTATTCTGATTCTGGCAAAGATGCTGGAAGGTTTTCGGCCGCGTGGCAGCTGTATAAGGCTCAAGAGGAGCTTATAAAGGTGGCTAAAGAGTATGGTGTGAAGCTGACAATGTTCCATGGCCGTGGAGGGACGGTCGGAAGAGGAGGTGGTCCAACTCACCTTGCTATTCTGTCTCAGCCTCCGGATACCATTCATGGATCGCTGCGCGTGACTGTCCAAGGTGAAGTTATTGAGCAATCATTTGGAGAGCAGCACTTGTGCTTCAGAACGCTTCAAAGGTTCACTGCAGCTACTCTAGAACATGGAATGCATCCTCCAATTTCTCCTAAACCAGAATGGCGGGCTTTGATGGATGAGATGGCTGTCATTGCCACTGAGGAGTACCGGTCCATTGTGTTCAAAGAACCACGATTTGTTGAGTATTTCCGCCTGGCCACACCTGAGTTGGAATATGGAAGGATGAACATTGGAAGTCGACCGGCAAAGAGGAGGCCAAGTGGAGGTATTGAGACACTGCGCGCCATACCTTGGATCTTTGCATGGACACAAACAAGGTTCCATCTTCCAGTGTGGCTAGGCTTTGGTGCAGCATTCGAACATGTTATTGAGAAGGATGTTAGGAATATTCATGTGCTGCAGGAGATGTATAATCAATGGCCTTTCTTTAGGGTCACTATTGATTTAGTGGAAATGGTGTTTGCCAAAGGAGACCCGGGGATCGCTGCTCTTTATGATAGGCTCCTTGTTTCAGAGGATCTGTGGTCATTTGGAGAGCAGTTGAGGACCAAGTATGAAGAAACCAAGGAATTCCTCCTTCAGGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAAAGACTGCGCTTGCGTGATTCTTATATTACTACCCTAAACGTGTGCCAAGCCTACACATTGAAACGTATACGCGATCCAAACTATAACGTGAAGCTGCGCCCTCACATCTCCAAGGAGTCTATAGAGGTAAGTAAACCTGCTGATGAACTCATAACACTTAACCCAACAAGTGAATATGCACCTGGTTTGGAAGACACCCTCATTCTCACCATGAAGGGTATTGCTGCTGGCTTGCAAAACACTGGCTAA
>Glyma06g33380.1 sequence type=predicted peptide gene model=Glyma06g33380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANRNLEKMASIDAQLRLLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYEGKHDPKKLEELGNLITSLDAGDSIVVAKSFSHMLNLANLAEEVQIAHSRRNKLKKGDFADENNATTESDIEETLKKLVGDMKKSPQEVFNALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNNLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPTFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIENLMFELSMWRCNDELRVRADELNRSSKKNSVAKHYIEFWKVIPPNEPYRVLLGEVRNRLYHTRERSRHLLAHGYSDIPEEETFTNVEEFLEPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITKHLEIGSYQEWSEEKRQQWLLSELSGKRPLFGPDLPQTEEIRDVLDTFHVIAELPPDNFGAYIISMATAPSDVLAVELLQRECHVKHPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKEYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEQHLCFRTLQRFTAATLEHGMHPPISPKPEWRALMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFEHVIEKDVRNIHVLQEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEDLWSFGEQLRTKYEETKEFLLQVAGHRDLLEGDPYLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYNVKLRPHISKESIEVSKPADELITLNPTSEYAPGLEDTLILTMKGIAAGLQNTG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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