SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G51690 | AT | Annotation by Michelle Graham. TAIR10: PIF1 helicase | chr3:19176731-19178107 REVERSE LENGTH=331 | SoyBase | E_val: 4.00E-63 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR10492 | Panther | HELICASE-RELATED | JGI | ISS | |
| PF05970 | PFAM | PIF1 helicase | JGI | ISS | |
| UniRef100_G7IVL4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent DNA helicase PIF1 n=1 Tax=Medicago truncatula RepID=G7IVL4_MEDTR | SoyBase | E_val: 2.00E-156 | ISS |
| UniRef100_I1N6U7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6U7_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma06g33192 not represented in the dataset |
Glyma06g33192 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g229500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g33192.1 sequence type=CDS gene model=Glyma06g33192 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCACAAATTTTGTTTTGAAGCACTTGATCAAAGTTTGAGAGATATTATTAAAGGCAAATCCAGTTCCAATAAAATCTTTGGAGGTAAAGTCATGGTGTTCGGTGGAGATTTCCGACAAATCCTACCAGTCATTCCCAGAGGCAATCGTTCAGACATTGTAAATGCAACAATAAATTCCTCTTATCTATGGGATTATTGTCAGGTATTAACACTGACAAAAAACATGCGTTTACAAAGCAATATACAAGCAGTAGATGAACAAGAGACTGCCACATTTGCACAATGGATTGTGGACATTGGAGATGGAATTATTGGACATCAAAATGATGGGTATGCTACAGTCAAAATCCTAAAGGATCTGTTGATAACAGAATATGATGATCCAATCCATGTTATACTTTCAACCAATGAAACAGTCCAACAAGTCAATGATTATATACTAGCATTGATCCCAGGTGAACACATGGAATATCTAAGTTCTGACTCACTAGACAAATCAGAAACCATTGAAAGTTGTCATTTCCACTCACTAACTACTGAATTTCTTAATTCATTGACAAAATCTGGTTTGCTGAATCATTGTATCAAACTGAAAATTGGAACTCCTATAATGTTGTTAAGAAACTTAGACCAAACTCAAGGGTTGTGTAATGACACTAGATTAATTGTTACAAGGCTAGCAAAACACGTTATTGCAGCTCAAATTATTTCTCGAAAAAATGTTGGCCATAATGTTTATATTCCTAGAATGTCCATGTCCCTTTCTCAATCACCATGGCCTTTTAAGATTTTGAGAAGACAATTCCCAATAATGCTCTCTTATGCAATTACAATTAACAAGTCTCAAGGGCAATCACTATCTACAGTTGGACTTTACTTACCAAAATCAGTTTTTAGTCATGGTCAATTATATGTTGCATTATCAAGGGTCAAATCAAAGAAAGGACTAAAAGTTTTAATACATGATAAAGACAAAAAAAAATTGACTTCTACCACCAATGTAGTTTTCAAAGAGGTCTTCAAAAATCTAACAAGTGTTTTAAATTCTGCAATGAAATTCAATTGGACTGCATTATTTGAACTACATGCTATGATTGTCTTTCATCTGCAATCATCACACAAAGCCAAAATGACTATACATTTGGCTTTTCGGGAACGAATTTGA
>Glyma06g33192.1 sequence type=predicted peptide gene model=Glyma06g33192 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAHKFCFEALDQSLRDIIKGKSSSNKIFGGKVMVFGGDFRQILPVIPRGNRSDIVNATINSSYLWDYCQVLTLTKNMRLQSNIQAVDEQETATFAQWIVDIGDGIIGHQNDGYATVKILKDLLITEYDDPIHVILSTNETVQQVNDYILALIPGEHMEYLSSDSLDKSETIESCHFHSLTTEFLNSLTKSGLLNHCIKLKIGTPIMLLRNLDQTQGLCNDTRLIVTRLAKHVIAAQIISRKNVGHNVYIPRMSMSLSQSPWPFKILRRQFPIMLSYAITINKSQGQSLSTVGLYLPKSVFSHGQLYVALSRVKSKKGLKVLIHDKDKKKLTSTTNVVFKEVFKNLTSVLNSAMKFNWTALFELHAMIVFHLQSSHKAKMTIHLAFRERI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
