SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g33130

Feature Type:gene_model
Chromosome:Gm06
Start:34040651
stop:34044702
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g33130
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G28200AT Annotation by Michelle Graham. TAIR10: FH interacting protein 1 | chr1:9850395-9852300 REVERSE LENGTH=259 SoyBaseE_val: 3.00E-62ISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0016197GO-bp Annotation by Michelle Graham. GO Biological Process: endosomal transport SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF02893PFAM GRAM domain JGI ISS
UniRef100_G7IH46UniRef Annotation by Michelle Graham. Most informative UniRef hit: GEM-like protein n=1 Tax=Medicago truncatula RepID=G7IH46_MEDTR SoyBaseE_val: 2.00E-92ISS
UniRef100_I1KDL0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDL0_SOYBN SoyBaseE_val: 3.00E-160ISS

Expression Patterns of Glyma06g33130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g33130 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g229400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g33130
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g33130
>Glyma06g33130.2   sequence type=transcript   gene model=Glyma06g33130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGCTTAATAATTTGGGTGTGAATGGATGTCGACTCATCTTTTTTCTTTTTATTCAGAGGCAGAATGGACCTACATATATATTAATTTTTTGTACAACATATTCCTATTCATACTATTCCATTTTGTCCCTCTCTTACCTTTGCATCCATTATTAATGATCAAGTTCTCTTTATTCAACCTCTCAACAAACTAAAGAGTGAAAGATCACGCTGAAGGATCCCTGCTAATTAAATTAAAGCAACTTAATTAGCAGTATAGCATGTCCAACAATGGCAGCAACAACCCTTATGTTCAAATTTCCCCTCTTCACACCAACCGTCCAAAGCCAATGGATACGGTGTGTGATGCATTAAACCGCTGCAGCAGGAAGGTTGGAAAAGCAACTAGAAGAGCTGAGACCATGGCTGACAATTTCTGGAATCATATCAGAATTGGTTCTAGTCTTGCTGATGCAGCAGTGGCTAGAATCGTTCAAGGAACAAAGGTGCTTACACTAGGAGGACCTGATATATTATTTCAACAATCATTTGGGAATTTTCCAGGAGAGAAGCTCATAAAGTCATTTGCTTGCTACTTATCAACATCTACTGGACCTGTAATTGGAACAATATATGTATCAACTAAAAGAGTAGCCTTTTGCAGCGACTATCCACTGTGCAATTATCCACTCTCGCTGCAGCAAAACCAGAGTGTGCATTATAAGGTACTTATCTTCTTTCTTGCAAAGTAAACAACACCCTGTAGTTTGTATTTGATTATGTTTCCTGATTGGTTGCTACTTGCTAGTAATCTTCTGATACAAGAAACTCAGGATAAGCCTAGGTGAGTTAAACTGTATTCGTTGGAATTTAATTAGAATGAACTGTTAGTGGAAAGGATTTTTACAATGTCATATAATCTCTGGTGTGTCATGTATAAAAATTTATTAGGTATTCCTCAACCACCACATAGTTGATGGTCCTAATTTCCTAATCAATCTTTACATGACACGTAATTAAGCG
Coding sequences of Glyma06g33130
>Glyma06g33130.1   sequence type=CDS   gene model=Glyma06g33130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAACAATGGCAGCAACAACCCTTATGTTCAAATTTCCCCTCTTCACACCAACCGTCCAAAGCCAATGGATACGGTGTGTGATGCATTAAACCGCTGCAGCAGGAAGGTTGGAAAAGCAACTAGAAGAGCTGAGACCATGGCTGACAATTTCTGGAATCATATCAGAATTGGTTCTAGTCTTGCTGATGCAGCAGTGGCTAGAATCGTTCAAGGAACAAAGGTGCTTACACTAGGAGGACCTGATATATTATTTCAACAATCATTTGGGAATTTTCCAGGAGAGAAGCTCATAAAGTCATTTGCTTGCTACTTATCAACATCTACTGGACCTGTAATTGGAACAATATATGTATCAACTAAAAGAGTAGCCTTTTGCAGCGACTATCCACTGTGCAATTATCCACTCTCGCTGCAGCAAAACCAGAGTGTGCATTATAAGGTCGTGTTGCAACTCGATCAGTTAAGCACGGTTAGTCCTTTCTCAAATAGATTTAACCCTGCAGAAAAATACATGCAGCTTGTCACAGTGGATGGTTATGAATTCTATTTTATGGGGTTTATAGCATATGACAAGGCTCTCAAGACAGTAAGAGAGGCTTCACTGCAATATCACAACCATTCCAGAGAAAGCTCGAATGCTTGA

>Glyma06g33130.2   sequence type=CDS   gene model=Glyma06g33130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAACAATGGCAGCAACAACCCTTATGTTCAAATTTCCCCTCTTCACACCAACCGTCCAAAGCCAATGGATACGGTGTGTGATGCATTAAACCGCTGCAGCAGGAAGGTTGGAAAAGCAACTAGAAGAGCTGAGACCATGGCTGACAATTTCTGGAATCATATCAGAATTGGTTCTAGTCTTGCTGATGCAGCAGTGGCTAGAATCGTTCAAGGAACAAAGGTGCTTACACTAGGAGGACCTGATATATTATTTCAACAATCATTTGGGAATTTTCCAGGAGAGAAGCTCATAAAGTCATTTGCTTGCTACTTATCAACATCTACTGGACCTGTAATTGGAACAATATATGTATCAACTAAAAGAGTAGCCTTTTGCAGCGACTATCCACTGTGCAATTATCCACTCTCGCTGCAGCAAAACCAGAGTGTGCATTATAAGGTACTTATCTTCTTTCTTGCAAAGTAA
Predicted protein sequences of Glyma06g33130
>Glyma06g33130.1   sequence type=predicted peptide   gene model=Glyma06g33130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNNGSNNPYVQISPLHTNRPKPMDTVCDALNRCSRKVGKATRRAETMADNFWNHIRIGSSLADAAVARIVQGTKVLTLGGPDILFQQSFGNFPGEKLIKSFACYLSTSTGPVIGTIYVSTKRVAFCSDYPLCNYPLSLQQNQSVHYKVVLQLDQLSTVSPFSNRFNPAEKYMQLVTVDGYEFYFMGFIAYDKALKTVREASLQYHNHSRESSNA*

>Glyma06g33130.2   sequence type=predicted peptide   gene model=Glyma06g33130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNNGSNNPYVQISPLHTNRPKPMDTVCDALNRCSRKVGKATRRAETMADNFWNHIRIGSSLADAAVARIVQGTKVLTLGGPDILFQQSFGNFPGEKLIKSFACYLSTSTGPVIGTIYVSTKRVAFCSDYPLCNYPLSLQQNQSVHYKVLIFFLAK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo