Glyma06g33080 - SoyBase

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Report for Sequence Feature Glyma06g33080

Feature Type:	gene_model
Chromosome:	Gm06
Start:	33948162
stop:	33953953
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g33080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14890	AT	Annotation by Michelle Graham. TAIR10: phosphoesterase \| chr3:5008751-5013060 FORWARD LENGTH=684	SoyBase	E_val: 7.00E-107	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR12083	Panther	POLYNUCLEOTIDE KINASE- 3'-PHOSPHATASE	JGI		ISS
PF08645	PFAM	Polynucleotide kinase 3 phosphatase	JGI		ISS
UniRef100_B9SEU6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polynucleotide kinase-3'-phosphatase, putative n=1 Tax=Ricinus communis RepID=B9SEU6_RICCO	SoyBase	E_val: 2.00E-116	ISS
UniRef100_I1KDK7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDK7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g33080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g33080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g229100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g33080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g33080

Limit To All Plant Sequences

>Glyma06g33080.1   sequence type=CDS   gene model=Glyma06g33080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCATTCCATGCTCCGAATGACAAGTCTGAAGAGAAGGTTCTTAATGCAATAGAAGATGTACAAAATGAACCGCAAGAGACTGAAGAACATGATTCAAAGAGATTTAAGTTGTGCACACCTGATATTAAAGCTGTGGTGAACATTAAATTTTCTGTTTCTGATGTCAAGAGCAATTACAGGGATGCTACCCTTTTACCAAAATGGAAGGCATTCCAAACAGTCATATTTCTTGAACGGGATGATGGTCTGTATGATTCAAGTAAAATTGCTGCATTTGATTTTGATGGATGCCTTGCAAACACAGATGTGAAAAGAGTGGGTGAAAATGCTTGGTCCCTCATGCATTCGTCAATTCCTGATAAACTACAAAGCCTATACAATGATGGCTACAAGTTGGTAATTTTCACCAATGAATCCAATATTGAACGTTGGAAGAATAAGAGGCAAGTAGCTGTGGACTCAAAAATTGGACGTCTAAATAATTTTATTGAGAAAGTGAAGGTTCCAGTTCAGGTTTATATAGCTTGTGGTGTAGGCAGTAAATCAGGTAAAGCAGACAAAAAGGAAGATGATCCTTTTCGCAAACCCAAGCCAGGGATGTGGCATCTTATGGAGCAACACTTCAACTCTGGCATCGCCATTGATATGGATCAATCCTTTTATGTTGGTGATGCAGCCGGGAGAGAATCAGATCACAGTGATGCTGATATTAAATTTGCAGAGGCCATTGGCTTAAAATTTTATGTCCCTGAAGAGTACTTCGCCTGA

Predicted protein sequences of Glyma06g33080

Limit To All Plant Sequences

>Glyma06g33080.1   sequence type=predicted peptide   gene model=Glyma06g33080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAFHAPNDKSEEKVLNAIEDVQNEPQETEEHDSKRFKLCTPDIKAVVNIKFSVSDVKSNYRDATLLPKWKAFQTVIFLERDDGLYDSSKIAAFDFDGCLANTDVKRVGENAWSLMHSSIPDKLQSLYNDGYKLVIFTNESNIERWKNKRQVAVDSKIGRLNNFIEKVKVPVQVYIACGVGSKSGKADKKEDDPFRKPKPGMWHLMEQHFNSGIAIDMDQSFYVGDAAGRESDHSDADIKFAEAIGLKFYVPEEYFA*

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