Glyma06g32870 - SoyBase

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Report for Sequence Feature Glyma06g32870

Feature Type:	gene_model
Chromosome:	Gm06
Start:	33837618
stop:	33843206
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g32870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14910	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 158 Blast hits to 158 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). \| chr3:5015432-5017566 FORWARD LENGTH=455	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR12472	Panther	RAB3-GAP REGULATORY DOMAIN	JGI		ISS
UniRef100_B9SEV1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rab3 gtpase-activating protein non-catalytic subunit, putative n=1 Tax=Ricinus communis RepID=B9SEV1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KDK6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDK6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g32870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g32870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g228900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g32870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g32870

Limit To All Plant Sequences

>Glyma06g32870.1   sequence type=CDS   gene model=Glyma06g32870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCCGGCGATCGTACAAGACGGAGTTGGGTTGCATAGCATGCGACGAACTGGGCGAGCTGGGAGCGGGGAAGCCCCACTGGCTGGTGGAGACCCCTCAGCTCCTCTGCGCCATCGACACGCACTCTCTCCTCCTCGCCAACCGCTCCACCATCCTCCTCCTCTCCTGGTCCTCCGACTCCACCGCCGCTGCACCGCCGCCCCTCAAGATCCGACCCGACCTCTCCCCCATCGATGCCGAGTCCATCTCCGCCCTCGAGTGGCTCGCCTTCCGCGACCACCGCGTCATCGTCGCCGGCACCTCCTCCGGCTACCTCCTCCTCTACTCCCTCCAAGGGGAACTGATTCACCGCCAGATGATTTATCCTGAACGAGTTTTAAAGTTAAGAGTTCGTGGAACAAAGAAAGATTTGATTCAAGATACCTCCTCAGAAGAGTTTTGTCTCATTATGTCAGGTGTAATTGCCCGTTTTGATGGCTCTGATATTCAGAATATGCTGCAAAAATGGTTTGAAGAAGCAAACTCTCGATTTTCAGATCAAAACCCAAAGAGCCAAGATTCAGAGGATTTTGAAAATACTGATGTAAAAATACCTTACCAGTTATGGAATATTGGCAAGTATGGTACTTGTGCTGATGCAGCAATTACTGGCATAATGCCCCCTCCACTTATGGAACAACAACAGTCAAATCAACGATATTATTGTGCAGTGGCTGTTGGAGAGGATGCCGTGATTTCAGCATACAGACTTTCTGAGAACAAAGGCAGGTCTTTAGTGGGAGCTATCTTGTCTAAAGTTGTACCTGCAACATTTTCCACTATAAGTTCTTTTTCTAAGTTGATATGGCGGAATGAACGGTCGTCTCCAAAGAAGTCAGATCTGAAGCCTCGGCCATTTGCTCGAGCTTCACCTCTGACATGTTTAAAGGATCACCCTAGGAAAGGTGAGAAGCTTACCTTATCACCAAGTGGTACATTGGCAGCTATAACAGATTCACTTGGTCGCATATTGCTGCTTGATACTCAAGCACTTGTGGTGGTGCGCTTATGGAAGGGATATAGGGATGCCAGCTGTCTATTCATGGAGATGTTGGTGAACAAAGATATAGCATCATCAAGCTCTTCTTATTCTGAACCATTGAAGAGTGATTATTGCTTGTGTTTGGCTATTCATGCACCTAGGAAAGGAATTATTGAGATCTGGCAAATGAGAACCGGACAACGTCTTAGAACGATTTCGTGCACAAAAGGTAGTAAAATGTTACAACCCAGCTACAGGTTTGGAGCATCAGTGTCCTCTCCTTATGTCCCTCTGGAAGTTTTCTTGTTAAATGGGGACTCAGGTCAGATATCAGTCTTAAATAGAACCTTGGATTCTTGA

Predicted protein sequences of Glyma06g32870

Limit To All Plant Sequences

>Glyma06g32870.1   sequence type=predicted peptide   gene model=Glyma06g32870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRRSYKTELGCIACDELGELGAGKPHWLVETPQLLCAIDTHSLLLANRSTILLLSWSSDSTAAAPPPLKIRPDLSPIDAESISALEWLAFRDHRVIVAGTSSGYLLLYSLQGELIHRQMIYPERVLKLRVRGTKKDLIQDTSSEEFCLIMSGVIARFDGSDIQNMLQKWFEEANSRFSDQNPKSQDSEDFENTDVKIPYQLWNIGKYGTCADAAITGIMPPPLMEQQQSNQRYYCAVAVGEDAVISAYRLSENKGRSLVGAILSKVVPATFSTISSFSKLIWRNERSSPKKSDLKPRPFARASPLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDASCLFMEMLVNKDIASSSSSYSEPLKSDYCLCLAIHAPRKGIIEIWQMRTGQRLRTISCTKGSKMLQPSYRFGASVSSPYVPLEVFLLNGDSGQISVLNRTLDS*

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