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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G34250 | AT | Annotation by Michelle Graham. TAIR10: SecY protein transport family protein | chr2:14462635-14464572 FORWARD LENGTH=475 | SoyBase | E_val: 0 | ISS |
| GO:0006007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucose catabolic process | SoyBase | N/A | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0009306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein secretion | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0015450 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1373 | KOG | Transport protein Sec61, alpha subunit | JGI | ISS | |
| PTHR10906 | Panther | SECY/SEC61-ALPHA FAMILY MEMBER | JGI | ISS | |
| PF00344 | PFAM | eubacterial secY protein | JGI | ISS | |
| PF10559 | PFAM | Plug domain of Sec61p | JGI | ISS | |
| UniRef100_G7LD29 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein transport protein Sec61 subunit alpha n=1 Tax=Medicago truncatula RepID=G7LD29_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KDJ8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDJ8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g32680 not represented in the dataset |
Glyma06g32680 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g227200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g32680.2 sequence type=transcript gene model=Glyma06g32680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGCAAAAGCTGCAACTCCGCTTCTCCTATTAGAATTCTCACAAAAGCTTCACAAAATTCACAAAGCTTCATTCTTCATAGTTCAGAATTCAGATCCATTCTTGTCCTATCTTTTTTTTTCTTTTAGATTTTTCTTTAAAATTCTCTATCGACCAAAGATCTTCAACAAACCGGTTAAGTTTGTGTAGTTTGGTAAGATGGGTGGTGGATTTAGAGTGCTTCACTTAGTTAGACCATTTCTCTCGTTTCTTCCTGAAGTTCAGACTGCTGACAGGAAAGTGCCATTTAGAGAGAAGGTCATATATACTGTGATCTCTCTGTTCATTTTCCTTGTTTGCAGTCAGCTTCCTCTGTATGGCATACACTCAACAACAGGTGCTGATCCATTCTATTGGATGCGTGTTATCCTTGCTTCAAACCGTGGAACTGTTATGGAGCTGGGAATCACCCCCATTGTGACTTCTGGGCTGGTAATGCAACTTTTGGCTGGATCGAAGATCATTGAAGTGGACAACAATGTAAGGGAGGATCGTGCTCTCTTAAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCTGTTGGTGAGGCAGTTGCATATGTTCTTTCTGGAATGTATGGTAGTGTGGGTCAACTTGGAGTGGGAAATGCCATCCTCATCATCCTCCAGCTATGTTTTGCGGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAAAAAGGCTATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGTGAAAACATCATATGGAAAGCATTTAGTCCCACCACCATTAACAGTGGACGTGGAGCTGAATTTGAAGGTGCTGTCATTGCTCTATTCCATTTGTTGATAACTAGAACAGACAAGGTTCGTGCCCTTCGTGAAGCATTTTACCGGCAAAACCTTCCCAATGTGACAAATCTGCTTGCTACCATCTTGATCTTCCTAATTGTGATATACTTCCAAGGATTTCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACAGCAGGGGTCTTATCCAATCAAGTTATTTTATACCTCCAACATGCCCATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCTCAGCTTCTACACAGAAAGTACAGTGGAAACTTCATTGTAGATCTATTGGGCAAATGGAAGGAGTCTGAATATGGAGGTGGTCAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGCCTGTGCCTTGTTCTCTAAAACTTGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCAAAGCAGCTGAAGGAACAACAAATGGTAATGCCTGGACATCGGGAATCAAACTTGCAGAAAGAACTGAACCGATACATTCCCACCGCGGCAGCATTTGGAGGCATATGTATCGGTGCATTGACTGTGTTGGCAGATTTCATGGGGGCAATTGGTTCAGGGACAGGAATATTGCTTGCAGTAACAATCATCTATCAGTACTTCGAAACATTTGAGAAGGAGAGAGCAAGCGAGCTTGGCTTCTTCGGTTTCTAAGCTCTGCTTAGCACATTCACTGTTGGTGACGCAATTCGGCTCTACCGCACCCACAGTTTTGTTGTGTAATGAGGACTGGTTGGTAGGTTGTTTAACACAGTAAGGAAGAACTTAGATTAGTTTTGTATCACTTTTCTCAACCGAGGAAGCCCTAGTATAATATCACTGTAAACGTTATGGAGTTTCTCTGAATACACTTGCGTTAATTTAAGTTGTCAGTTCTAGAAATTACTTGCTATTTAATATTATTAGTTTTCTTGACGTGCATTGCAGTAGTTTTTGACGTGAATCTTTCAATTGAAAGGGTAACTATTTGAAAGGTATAGCTGATGTTAAGGTGCAAAGTCTGATGTTAGGTTTATCTCAAGATTTAAGACAGAATTTCT
>Glyma06g32680.1 sequence type=CDS gene model=Glyma06g32680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGGTGGATTTAGAGTGCTTCACTTAGTTAGACCATTTCTCTCGTTTCTTCCTGAAGTTCAGACTGCTGACAGGAAAGTGCCATTTAGAGAGAAGGTCATATATACTGTGATCTCTCTGTTCATTTTCCTTGTTTGCAGTCAGCTTCCTCTGTATGGCATACACTCAACAACAGGTGCTGATCCATTCTATTGGATGCGTGTTATCCTTGCTTCAAACCGTGGAACTGTTATGGAGCTGGGAATCACCCCCATTGTGACTTCTGGGCTGGTAATGCAACTTTTGGCTGGATCGAAGATCATTGAAGTGGACAACAATGTAAGGGAGGATCGTGCTCTCTTAAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCTGTTGGTGAGGCAGTTGCATATGTTCTTTCTGGAATGTATGGTAGTGTGGGTCAACTTGGAGTGGGAAATGCCATCCTCATCATCCTCCAGCTATGTTTTGCGGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAAAAAGGCTATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGTGAAAACATCATATGGAAAGCATTTAGTCCCACCACCATTAACAGTGGACGTGGAGCTGAATTTGAAGGTGCTGTCATTGCTCTATTCCATTTGTTGATAACTAGAACAGACAAGGTTCGTGCCCTTCGTGAAGCATTTTACCGGCAAAACCTTCCCAATGTGACAAATCTGCTTGCTACCATCTTGATCTTCCTAATTGTGATATACTTCCAAGGATTTCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACAGCAGGGGTCTTATCCAATCAAGTTATTTTATACCTCCAACATGCCCATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCTCAGCTTCTACACAGAAAGTACAGTGGAAACTTCATTGTAGATCTATTGGGCAAATGGAAGGAGTCTGAATATGGAGGTGGTCAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGCTTAGCTGATATGGCAGCCAATCCTTTCCATGCATTATTCTACCTTGTGTTTATGTTGTCAGCCTGTGCCTTGTTCTCTAAAACTTGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCAAAGCAGCTGAAGGAACAACAAATGGTAATGCCTGGACATCGGGAATCAAACTTGCAGAAAGAACTGAACCGATACATTCCCACCGCGGCAGCATTTGGAGGCATATGTATCGGTGCATTGACTGTGTTGGCAGATTTCATGGGGGCAATTGGTTCAGGGACAGGAATATTGCTTGCAGTAACAATCATCTATCAGTACTTCGAAACATTTGAGAAGGAGAGAGCAAGCGAGCTTGGCTTCTTCGGTTTCTAA >Glyma06g32680.2 sequence type=CDS gene model=Glyma06g32680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGGTGGATTTAGAGTGCTTCACTTAGTTAGACCATTTCTCTCGTTTCTTCCTGAAGTTCAGACTGCTGACAGGAAAGTGCCATTTAGAGAGAAGGTCATATATACTGTGATCTCTCTGTTCATTTTCCTTGTTTGCAGTCAGCTTCCTCTGTATGGCATACACTCAACAACAGGTGCTGATCCATTCTATTGGATGCGTGTTATCCTTGCTTCAAACCGTGGAACTGTTATGGAGCTGGGAATCACCCCCATTGTGACTTCTGGGCTGGTAATGCAACTTTTGGCTGGATCGAAGATCATTGAAGTGGACAACAATGTAAGGGAGGATCGTGCTCTCTTAAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCTGTTGGTGAGGCAGTTGCATATGTTCTTTCTGGAATGTATGGTAGTGTGGGTCAACTTGGAGTGGGAAATGCCATCCTCATCATCCTCCAGCTATGTTTTGCGGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAAAAAGGCTATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGTGAAAACATCATATGGAAAGCATTTAGTCCCACCACCATTAACAGTGGACGTGGAGCTGAATTTGAAGGTGCTGTCATTGCTCTATTCCATTTGTTGATAACTAGAACAGACAAGGTTCGTGCCCTTCGTGAAGCATTTTACCGGCAAAACCTTCCCAATGTGACAAATCTGCTTGCTACCATCTTGATCTTCCTAATTGTGATATACTTCCAAGGATTTCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACAGCAGGGGTCTTATCCAATCAAGTTATTTTATACCTCCAACATGCCCATTATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATTTCTCAGCTTCTACACAGAAAGTACAGTGGAAACTTCATTGTAGATCTATTGGGCAAATGGAAGGAGTCTGAATATGGAGGTGGTCAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGCCTGTGCCTTGTTCTCTAA
>Glyma06g32680.1 sequence type=predicted peptide gene model=Glyma06g32680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATILIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFIVDLLGKWKESEYGGGQSVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF* >Glyma06g32680.2 sequence type=predicted peptide gene model=Glyma06g32680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATILIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFIVDLLGKWKESEYGGGQSVPVGGIAYYITAPSSLCLVL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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