SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G67080 | AT | Annotation by Michelle Graham. TAIR10: mitogen-activated protein kinase kinase kinase 19 | chr5:26772726-26773760 FORWARD LENGTH=344 | SoyBase | E_val: 2.00E-60 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0198 | KOG | MEKK and related serine/threonine protein kinases | JGI | ISS | |
| PTHR24361 | Panther | MITOGEN-ACTIVATED KINASE KINASE KINASE | JGI | ISS | |
| PTHR24361:SF58 | Panther | JGI | ISS | ||
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_G3ECQ9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Rsmv23 protein n=1 Tax=Glycine max RepID=G3ECQ9_SOYBN | SoyBase | E_val: 7.00E-62 | ISS |
| UniRef100_I1KDJ2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KDJ2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g31550 not represented in the dataset |
Glyma06g31550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g226000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g31550.2 sequence type=CDS gene model=Glyma06g31550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCGTGGAAGAAGTTGGCAATTTTAGGGAAGGGTTCTTATGCTACGGTTTATCTTGCTACTGTTGCTCTTCCACAAGAATGCAATGAGAAGGTTGTAGCGGTCAAGAGTTCGAGCCCTTTCTCTTTCTCAATTGCTTCAATGCAGAAGGAAAAAAGAATACTGGACTCATTCTTGGGTTGCAAGGAAATCCTTCAATGCTATTTTGACCAATTCACTGTTGAGAGAAATTATGTGACATACAATCTTTTCATGGAGTGTGCTCCTTATGGTTCTCTTCTTGGTTTAGTAAACAAGAAGGGGCCAATATCGGATAGTGAAGTAAGAGTCTACACTCGTATGCTTCTCAAAGGGCTTTCTTGCATTCATCGAAAAGGAGTCGTCCATTGTGATCTCAAACCGGACAACATCCTTCTCTTTCCTTCATCTGATGATCATGCAAGGTATCAACTGAAGATTGCTGATTTTGGGTTGTCCAAGACTAGAGAAGATGCAAATGCTGAGTATGGGAAGGTCAAGTTTAGAGGGACACCTTTTTACATGTCACCAGAATCGGTCGTTGGTCAGATTGAACCAGCGTTAGATATATGGTCTCTTGGGTGCATTGTAATCGAGATGATCACTGGATTCCGTGCATGGAAGAACCTGCGAACCCAAAAGGAGATAATGTTCAAGCTTGTTGTCCTTCAAGAAGCACCTGAAATACCCAATGAACTGAGTTGGGATTGCAAGAATTTCTTGAGCAAGTGTTTTGTGAAGGATCCTAGGCAGAGATGGACTGCTACAATGCTTCTCAACCATCCTTTTCTTTATCCAACACGTTACATTTTCTCACCGCCATCCCCTTTTCTGCCAGTAGGAAGAATTCATGTTTACAGGATAGAGATCTGTTGCAGATGA
>Glyma06g31550.2 sequence type=predicted peptide gene model=Glyma06g31550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAWKKLAILGKGSYATVYLATVALPQECNEKVVAVKSSSPFSFSIASMQKEKRILDSFLGCKEILQCYFDQFTVERNYVTYNLFMECAPYGSLLGLVNKKGPISDSEVRVYTRMLLKGLSCIHRKGVVHCDLKPDNILLFPSSDDHARYQLKIADFGLSKTREDANAEYGKVKFRGTPFYMSPESVVGQIEPALDIWSLGCIVIEMITGFRAWKNLRTQKEIMFKLVVLQEAPEIPNELSWDCKNFLSKCFVKDPRQRWTATMLLNHPFLYPTRYIFSPPSPFLPVGRIHVYRIEICCR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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