SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G24020 | AT | Annotation by Michelle Graham. TAIR10: Uncharacterised BCR, YbaB family COG0718 | chr2:10217869-10219269 REVERSE LENGTH=182 | SoyBase | E_val: 3.00E-78 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| PF02575 | PFAM | Uncharacterised BCR, YbaB family COG0718 | JGI | ISS | |
| UniRef100_I1KDI9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDI9_SOYBN | SoyBase | E_val: 1.00E-141 | ISS |
| UniRef100_Q9M098 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT4g30620/F17I23_40 n=1 Tax=Arabidopsis thaliana RepID=Q9M098_ARATH | SoyBase | E_val: 1.00E-73 | ISS |
|
Glyma06g31120 not represented in the dataset |
Glyma06g31120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g225800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g31120.2 sequence type=transcript gene model=Glyma06g31120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGCTTGTGCTGACAGTGCAAATGTGGAACAAAACAAAACTTGTCCCAAACCAAAATCATAATCACCGCCGAACCTACTCTTCCCTTCCAATCAAAAGAAATTCAACTTTATCCGATACTACCGCTTTCAATCTCATCCTTCGAAACCCAAACTTGAGCTTCTTCTTGTTTCTTGCTCGTGGAAGCAAATGACAACCGCGCCCTCTCTAACTGGTCCCTTGTCAAACGCGGTCGGATTCAGTGACTGGAAAAAACATGCCCCTTTGTCAGCTTCTCTCTGTAAACTAAGCTCCAGTTCAAATATAGTTGACATGAAGATATCTCGATGTGGTTGTCGGAAAGTTGGACATGGCCAAAGATGTTTCCGATTATATGCCCTATTTGGAGGAAAAAAGGACAATAATGGGAAAAGTGATGATGTTCCTTCTAAGGCCGGAATTCTAGGAAACATGCAAAATCTTTATGAGACTGTGAAGAAGGCACAAATGGTTGTCCAAGTTGAAGCTGTGCGTGTGCAGAAAGAACTCGCAGCAGCAGAGTTTGATGGTTATTGTGAGGGTGAGTTAGTTAAGGTAACGCTGTCTGGGAACCAGCAACCTGTAAGGACGGAAATTACTGAGGCAGCTATGGAATTGGGATCTGAAGTAAGTAAACAATTCAAAAACTTTCTCTTTTAATCACTGAGGCATACAAGGATGCACACCAAAAGAGCGTCCAGGCCATGAAGGAAAGGATGAATGATCTTGCACAGAGCTTAGGAATGCCACCGGGGCTTAGTGAAGGATTGAAGTGATGAATACTTTTATTATAGACTTACGAAATTGGGCCTCAATTTTGCACAAACATGGCAGGATGAGCTTATTTGTTTCTTCATTTACTATGTCTGTTAATTTGCAATCTTGGTTATTAAGAAAGAAATGGTGGTGGAGTTTTAATTGTTCTTTGTTTTATTCTTGTGTTATTCTTGTTTGAATGGTGAAAATTCTGTTGTGTCCGTATCCTATTATCCAGTTTTATCGATAGAGAAAAACCTGTGCCTGGTTATGAGGTTGTTGATTCATCAGCTGAAACTGAATAAAGTGAAAAACCTTAGGCGAGGCATTAGAGTCTCTGTATAAATTTGTTGCCTTACCTTTGGTATGCGAGATTAGAATCCACTGTATTGTACAAGAAAGCGAGACTTCAATAGAGATTTGTAGATTTAAACTACTTGACAAACATTCAAGAAAACGGCCAATTTCTGGTGAATAAGAACTACGATATGA
>Glyma06g31120.1 sequence type=CDS gene model=Glyma06g31120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAACCGCGCCCTCTCTAACTGGTCCCTTGTCAAACGCGGTCGGATTCAGTGACTGGAAAAAACATGCCCCTTTGTCAGCTTCTCTCTGTAAACTAAGCTCCAGTTCAAATATAGTTGACATGAAGATATCTCGATGTGGTTGTCGGAAAGTTGGACATGGCCAAAGATGTTTCCGATTATATGCCCTATTTGGAGGAAAAAAGGACAATAATGGGAAAAGTGATGATGTTCCTTCTAAGGCCGGAATTCTAGGAAACATGCAAAATCTTTATGAGACTGTGAAGAAGGCACAAATGGTTGTCCAAGTTGAAGCTGTGCGTGTGCAGAAAGAACTCGCAGCAGCAGAGTTTGATGGTTATTGTGAGGGTGAGTTAGTTAAGGTAACGCTGTCTGGGAACCAGCAACCTGTAAGGACGGAAATTACTGAGGCAGCTATGGAATTGGGATCTGAAAAACTTTCTCTTTTAATCACTGAGGCATACAAGGATGCACACCAAAAGAGCGTCCAGGCCATGAAGGAAAGGATGAATGATCTTGCACAGAGCTTAGGAATGCCACCGGGGCTTAGTGAAGGATTGAAGTGA >Glyma06g31120.2 sequence type=CDS gene model=Glyma06g31120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAACCGCGCCCTCTCTAACTGGTCCCTTGTCAAACGCGGTCGGATTCAGTGACTGGAAAAAACATGCCCCTTTGTCAGCTTCTCTCTGTAAACTAAGCTCCAGTTCAAATATAGTTGACATGAAGATATCTCGATGTGGTTGTCGGAAAGTTGGACATGGCCAAAGATGTTTCCGATTATATGCCCTATTTGGAGGAAAAAAGGACAATAATGGGAAAAGTGATGATGTTCCTTCTAAGGCCGGAATTCTAGGAAACATGCAAAATCTTTATGAGACTGTGAAGAAGGCACAAATGGTTGTCCAAGTTGAAGCTGTGCGTGTGCAGAAAGAACTCGCAGCAGCAGAGTTTGATGGTTATTGTGAGGGTGAGTTAGTTAAGGTAACGCTGTCTGGGAACCAGCAACCTGTAAGGACGGAAATTACTGAGGCAGCTATGGAATTGGGATCTGAAGTAAGTAAACAATTCAAAAACTTTCTCTTTTAA
>Glyma06g31120.1 sequence type=predicted peptide gene model=Glyma06g31120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTTAPSLTGPLSNAVGFSDWKKHAPLSASLCKLSSSSNIVDMKISRCGCRKVGHGQRCFRLYALFGGKKDNNGKSDDVPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELVKVTLSGNQQPVRTEITEAAMELGSEKLSLLITEAYKDAHQKSVQAMKERMNDLAQSLGMPPGLSEGLK* >Glyma06g31120.2 sequence type=predicted peptide gene model=Glyma06g31120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTTAPSLTGPLSNAVGFSDWKKHAPLSASLCKLSSSSNIVDMKISRCGCRKVGHGQRCFRLYALFGGKKDNNGKSDDVPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELVKVTLSGNQQPVRTEITEAAMELGSEVSKQFKNFLF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
