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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G57870 | AT | Annotation by Michelle Graham. TAIR10: MIF4G domain-containing protein / MA3 domain-containing protein | chr5:23439755-23443433 FORWARD LENGTH=776 | SoyBase | E_val: 0 | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0006413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational initiation | SoyBase | N/A | ISS |
| GO:0016070 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0003743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity | SoyBase | N/A | ISS |
| KOG0401 | KOG | Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) | JGI | ISS | |
| PTHR23253 | Panther | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | JGI | ISS | |
| PTHR23253:SF2 | Panther | EUKARYOTIC INITIATION FACTOR 4F-RELATED | JGI | ISS | |
| PF02847 | PFAM | MA3 domain | JGI | ISS | |
| PF02854 | PFAM | MIF4G domain | JGI | ISS | |
| UniRef100_G7JFK4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic initiation factor iso-4F subunit p82-34 n=1 Tax=Medicago truncatula RepID=G7JFK4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KDI8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDI8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g30880 not represented in the dataset |
Glyma06g30880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g225700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g30880.1 sequence type=CDS gene model=Glyma06g30880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGCAAGGTGATCCAACGGTCCTAAGCTTGAGGCCTGGTGGTGGTCGTGGCGGTGGAAGCAGGCTTTTCGCTCACTCGTCCTCCTCTTCCTCTCTCTCCGCCGATCTCCCTCTCTCGCGCCCTCATGCCTCTTTCTCTCTCAAGACTGGAGATTCACGGTTTGAGGGTCATGAGCGTGTGCGATATACCAGAGATCAGCTTTTACAGCTTAAAGAGGCTGTTGAGGTCCCTGATGATATTCTTAAGATTAAACAAGATATAGAAGCTGAACTTTTTGGTGAAGATCCAAGTTGGGGCCGTGCTGAAAGCAATCTTCCTCATCAATTACAAAATCGGTATTCTGAGCCAGATAACCGTGATTGGCGTGGTCGTTCTGGACAACCTCCTGCTAGTACAGATGAGAGATCTTGGGAAAACCTCAGAGATAACCGAGAGTTTGGTAATAGACAGCAGGATGCTAGTCAGGTTAATCGCCATGACCAACTTAATTCCCAGTTTGCAAGAACACAAATCTCTTCTATGCAAGGGGGAGGACCTACTCCTACGCTAGTCAAGGCTGAGGTTCCGTGGTCAGCCAGAAGGGGAAGTCTATCTGAAAAGGATCGTGTATTGAAGACTGTGAAAGGAATACTCAATAAGTTGACTCCTGAGAAATTTGATGTCCTGAAGGGTCAGTTAATCGATTCTGGCATTACATCAGCTGACATCTTAAAGGATGTCATTTCACTTATTTTTGATAAGGCTGTTCTAGAACCAACATTTTGCCCCATGTATGCTCATCTGTGTTCTGATCTAAATGAAAAGCTGCCTCCATTCCCATCTGAAGAACCTGGTGGGAAAGAAATCACCTTTAAGAGAGTGCTCTTGAATAATTGCCAGGAGGCTTTTGAAGGTGCTGAAAATCTGAGGGAGGAACTAAAAAGGATGACTGTCCCTGAGCGGGAGATGGAGCGTACGGACAAGGGAAGGCTGCTCAAGCTACGTACCCTTGGAAATATCCGTTTAATTGGTGAGCTATTGAAGCAGAAGATGGTTCCTGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGATCCCCAGACAGCAAATCTTGCCCAGTTGAGGAAAATGTTGAAGCCATATGTCAGTTTTTCAATACTATTGGCAAGCAGCTTGATGAAAGTCCTAAATCACGGCGTATAAATGATATTTACTTTAGCCGATTGAAAGAATTAAGCTCAAACCTACAACTTGTACCCCGGCTTAGGTTCATGATTCGGGATGTTATAGAGTTGCGTGCTAGTAACTGGGTTCCTAGACGGGAAGAGGTCAAAGCCAAAACCATTACTGAAATTCATTCAGAGGCAGAAAAAAATCTTGGTTTGCGGCCAGGAGCAACTGCAAGTATGAGAAATTCCCGTGGCGGTGTTCAAGGAAATGCCAGCTCTGGGGGCTTTCATATTGCTCGACCTGGTGCTGGGGGTTTGATGCCTGGAATGCCAGGGACCAGGAAGATGCCTGGATTTGATAATGACAACTGGGAGATGCCTAAGACTAGATCTATGCCAAGAGGAGATTCTTCAGGAGTTCAAGCTGCTGGATGCAGCAACTCTGCTTTACTTTCCAAGTCCACAACCCTCAATTCAAAACTGCTACCTCAAGGTAGTGGTGGTATTATAAGTGGAAGAAATAGTGCCCTAGTACATGGAGGTGGTACATTTTCTACTTCCTCAACAAACTTTTGTTTAGGTCCTGAGGCAGCGCCTCAACTCTCTTCACCTGCTCCTGTTCCTGTATCCTCTGAGAAGCCACAACCTCCAGCTGCAAGATTGAATACTGATGATCTTTGCCGCAGAACTGTCTCTCTTCTAGAAGAATATTTCAGTGTTCGGCTTTTGGAAGAGGCATTACAGTGTGTGGAGGAATTAAAATCTCCTTCTTACCACCCTGAGGTTGTTAAGGAAGCCATATACCTTGCACTTGATAAAAGTCCACCATGTGTTGAAACTGTTGCCAATCTCATTGAGTATCTGTATATTAAGAAGATTCTTACCCCTTTAGACATAGGGACTGGCTGTTTGTTATTTGGTTCTCTGCTGGATGATATTGGCATAGATTTACCTAAAGCACCAAGTAATTTTGGTGAGATAATTGGGAAACTAATTTTGGCTGGGGGATTGGATTTTAAGGTGGTGGGAGAGATTCTCAAGAAGGTGGATGATGACATGTTCCGGAGAGCAATATTTGACAGTGTGGTGGGGGCCATTAGATCTGCATCCGAGCAAGCCATTTTGGATGCACAAACTTCTGATATTGAGGTCTGCCAGAGTCAGCTCAAGTGA
>Glyma06g30880.1 sequence type=predicted peptide gene model=Glyma06g30880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQQGDPTVLSLRPGGGRGGGSRLFAHSSSSSSLSADLPLSRPHASFSLKTGDSRFEGHERVRYTRDQLLQLKEAVEVPDDILKIKQDIEAELFGEDPSWGRAESNLPHQLQNRYSEPDNRDWRGRSGQPPASTDERSWENLRDNREFGNRQQDASQVNRHDQLNSQFARTQISSMQGGGPTPTLVKAEVPWSARRGSLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAHLCSDLNEKLPPFPSEEPGGKEITFKRVLLNNCQEAFEGAENLREELKRMTVPEREMERTDKGRLLKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSPDSKSCPVEENVEAICQFFNTIGKQLDESPKSRRINDIYFSRLKELSSNLQLVPRLRFMIRDVIELRASNWVPRREEVKAKTITEIHSEAEKNLGLRPGATASMRNSRGGVQGNASSGGFHIARPGAGGLMPGMPGTRKMPGFDNDNWEMPKTRSMPRGDSSGVQAAGCSNSALLSKSTTLNSKLLPQGSGGIISGRNSALVHGGGTFSTSSTNFCLGPEAAPQLSSPAPVPVSSEKPQPPAARLNTDDLCRRTVSLLEEYFSVRLLEEALQCVEELKSPSYHPEVVKEAIYLALDKSPPCVETVANLIEYLYIKKILTPLDIGTGCLLFGSLLDDIGIDLPKAPSNFGEIIGKLILAGGLDFKVVGEILKKVDDDMFRRAIFDSVVGAIRSASEQAILDAQTSDIEVCQSQLK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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