SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G18730 | AT | Annotation by Michelle Graham. TAIR10: diacylglycerol kinase 3 | chr2:8118976-8121689 FORWARD LENGTH=488 | SoyBase | E_val: 0 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0007205 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein kinase C-activating G-protein coupled receptor signaling pathway | SoyBase | N/A | ISS |
| GO:0009963 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0004143 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: diacylglycerol kinase activity | SoyBase | N/A | ISS |
| PTHR11255 | Panther | DIACYLGLYCEROL KINASE | JGI | ISS | |
| PTHR11255:SF32 | Panther | JGI | ISS | ||
| PF00609 | PFAM | Diacylglycerol kinase accessory domain | JGI | ISS | |
| PF00781 | PFAM | Diacylglycerol kinase catalytic domain | JGI | ISS | |
| UniRef100_G7JD57 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Diacylglycerol kinase n=1 Tax=Medicago truncatula RepID=G7JD57_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LVU7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVU7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g30185 not represented in the dataset |
Glyma06g30185 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g223900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g30185.2 sequence type=transcript gene model=Glyma06g30185 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCCATTTGACGTTGTTCTTGGCCAAAGGCCAGGCCAATCGCCTCCGTTGTATCGATAAACCACAAAAACAAACAAACAAAATTCAAATTAAACCATCCTTCGCCATCCCTTCCCAGACCATACAGAAGCATCTCATTCAACAAATGCATCAAATAAATTAGCGGATCAGTTGTTAGATTATGTTGACGTTAACTTCTTTGTATTTTTTTCTCTTACAGGGTCACATTTCGTGTCCTTTTAATAAAGAGTTCTTGATTTGCCTTTAAAAAACGAAAAAAATTAGCGCATTAGATTCAACAGTTTTTTTTTTCCTGATTTGGATCAGAGCAAAAACAATGGACCCACCGTCATCATCAACAATGGTACCGATAAAGTCATCGTCGTCGATCGTGGAGTCGTTGCGGGGATGCGGCATTTCAGGTGGCACTCGTGTGGATAAGGAGGAGCTGAGGAAAAAGCTAACAATGCCAAAATACCTTCGCTTTGCAATGCGCGATTCTATCAGGTTCAAGGACCCAGCCGCCGGTGAGAGCCGCTGCATTCATAGCAAAGACGACCACAACGCGGTGGCACCGTCCACGCCTATGGTTGTTTTCATCAACCCTCGCAGCGGCGGTCGCCACGGCCCCTTCCTCAAGGAGAGGCTTCAACATCTAATGAGTGAAGAGCAGTTCACCGCAGGTGTTAGATATGTTAGATGTGAAGCCTCATGAGTTTCTCCGATATGGGTTAGGTTGTCTGGAGATGTTGGCCAGTCTTGGAGATTATTGTGCCAAAGAAACTCGTGAAAGAATACGGATTATGGTAGCCGGAGGGGATGGTAGTGTTGGCTGGGTATTAGGATGTCTCACAGAACTTCACGCACAAGGACGAGAACCTATTCCTCCAGTAGGGATCGTACCACTTGGTACAGGCAATGACTTGTCTAGGAGTCTTGGTTGGGGTGGTTCATTTCCTTTCTCATGGAAGACAGCCATTAAGAGAAGTCTTTACAAGGCTAGTATTGGTCCAATTTGTCATTTGGATAGTTGGCGACTTTCACTTTCAATGCCAGAAGGCACAATAATAGAACCACCACATTCTTTGAAGCATACAACAGAGTTCACACTTGATGAGGGCTTAGAAGTTGAGAGAGAATTATCTGAGAATGTTATATGTTACGAAGGCGTGTTCTACAATTACTTCAGTATAGGAATGGATGCCCAAGTGGCTTATGGTTTTCATCATTTACGGAATGAAAAACCTTACCTTGCACAAGGTCCAATTGCAAATAAGATTATATACTCTGGTTACTCCTGTACTCAAGGATGGTTCTTCACACCATGCACTAGTGATCCAGGATTAAGGGGACTTAAGAATATTTTGCGGATGCATGTCAAAAAGATCAATTGCTCAGAATGGGAGCAGGTTCTAGTTCCTACAAGTGTAAGAGCAATAGTTGCTCTAAATCTTCATAGTTATGGAAGTGGAAGAAATCCATGGGGTAATTTGACACCTGAGTATTTAGAGAAGAGAGGCTTCATTGAAGCACAATTTGATGATGGACTTTTAGAGATATTTGGTCTAAAACAAGGATGGCATGCAACATTTGTCATGAGTGAACTAATTTCTGCAAAGCATATAGCCCAGGCAACAGCTATTCGATTGGAAGTTAGAGGTGGGGAATGGAAAGATGCATTTATGCAAATGGATGGAGAACCCTGGAAACAACCTATGAGCAAGGACTTCTCCACTTTTGTGGAAATAAAAAGGGAACCTTTCCAATCAATCATGATTAATGGAGAATAATTCTATCTTCAAAGGTTAATTATTCCATAGTTCGCTATTCATGCAATGTATGCATATTACACGTAATGTAAATTTTTCACTTACTTTTTTATACCCTCGTTGCACTTTGTATATTTTTTTTATTTCTCTCATTTTTTCACATTACATATTATATTT
>Glyma06g30185.1 sequence type=CDS gene model=Glyma06g30185 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACCCACCGTCATCATCAACAATGGTACCGATAAAGTCATCGTCGTCGATCGTGGAGTCGTTGCGGGGATGCGGCATTTCAGGTGGCACTCGTGTGGATAAGGAGGAGCTGAGGAAAAAGCTAACAATGCCAAAATACCTTCGCTTTGCAATGCGCGATTCTATCAGGTTCAAGGACCCAGCCGCCGGTGAGAGCCGCTGCATTCATAGCAAAGACGACCACAACGCGGTGGCACCGTCCACGCCTATGGTTGTTTTCATCAACCCTCGCAGCGGCGGTCGCCACGGCCCCTTCCTCAAGGAGAGGCTTCAACATCTAATGAGTGAAGAGCAGGTGTTAGATATGTTAGATGTGAAGCCTCATGAGTTTCTCCGATATGGGTTAGGTTGTCTGGAGATGTTGGCCAGTCTTGGAGATTATTGTGCCAAAGAAACTCGTGAAAGAATACGGATTATGGTAGCCGGAGGGGATGGTAGTGTTGGCTGGGTATTAGGATGTCTCACAGAACTTCACGCACAAGGACGAGAACCTATTCCTCCAGTAGGGATCGTACCACTTGGTACAGGCAATGACTTGTCTAGGAGTCTTGGTTGGGGTGGTTCATTTCCTTTCTCATGGAAGACAGCCATTAAGAGAAGTCTTTACAAGGCTAGTATTGGTCCAATTTGTCATTTGGATAGTTGGCGACTTTCACTTTCAATGCCAGAAGGCACAATAATAGAACCACCACATTCTTTGAAGCATACAACAGAGTTCACACTTGATGAGGGCTTAGAAGTTGAGAGAGAATTATCTGAGAATGTTATATGTTACGAAGGCGTGTTCTACAATTACTTCAGTATAGGAATGGATGCCCAAGTGGCTTATGGTTTTCATCATTTACGGAATGAAAAACCTTACCTTGCACAAGGTCCAATTGCAAATAAGATTATATACTCTGGTTACTCCTGTACTCAAGGATGGTTCTTCACACCATGCACTAGTGATCCAGGATTAAGGGGACTTAAGAATATTTTGCGGATGCATGTCAAAAAGATCAATTGCTCAGAATGGGAGCAGGTTCTAGTTCCTACAAGTGTAAGAGCAATAGTTGCTCTAAATCTTCATAGTTATGGAAGTGGAAGAAATCCATGGGGTAATTTGACACCTGAGTATTTAGAGAAGAGAGGCTTCATTGAAGCACAATTTGATGATGGACTTTTAGAGATATTTGGTCTAAAACAAGGATGGCATGCAACATTTGTCATGAGTGAACTAATTTCTGCAAAGCATATAGCCCAGGCAACAGCTATTCGATTGGAAGTTAGAGGTGGGGAATGGAAAGATGCATTTATGCAAATGGATGGAGAACCCTGGAAACAACCTATGAGCAAGGACTTCTCCACTTTTGTGGAAATAAAAAGGGAACCTTTCCAATCAATCATGATTAATGGAGAATAA >Glyma06g30185.2 sequence type=CDS gene model=Glyma06g30185 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAGATGTGAAGCCTCATGAGTTTCTCCGATATGGGTTAGGTTGTCTGGAGATGTTGGCCAGTCTTGGAGATTATTGTGCCAAAGAAACTCGTGAAAGAATACGGATTATGGTAGCCGGAGGGGATGGTAGTGTTGGCTGGGTATTAGGATGTCTCACAGAACTTCACGCACAAGGACGAGAACCTATTCCTCCAGTAGGGATCGTACCACTTGGTACAGGCAATGACTTGTCTAGGAGTCTTGGTTGGGGTGGTTCATTTCCTTTCTCATGGAAGACAGCCATTAAGAGAAGTCTTTACAAGGCTAGTATTGGTCCAATTTGTCATTTGGATAGTTGGCGACTTTCACTTTCAATGCCAGAAGGCACAATAATAGAACCACCACATTCTTTGAAGCATACAACAGAGTTCACACTTGATGAGGGCTTAGAAGTTGAGAGAGAATTATCTGAGAATGTTATATGTTACGAAGGCGTGTTCTACAATTACTTCAGTATAGGAATGGATGCCCAAGTGGCTTATGGTTTTCATCATTTACGGAATGAAAAACCTTACCTTGCACAAGGTCCAATTGCAAATAAGATTATATACTCTGGTTACTCCTGTACTCAAGGATGGTTCTTCACACCATGCACTAGTGATCCAGGATTAAGGGGACTTAAGAATATTTTGCGGATGCATGTCAAAAAGATCAATTGCTCAGAATGGGAGCAGGTTCTAGTTCCTACAAGTGTAAGAGCAATAGTTGCTCTAAATCTTCATAGTTATGGAAGTGGAAGAAATCCATGGGGTAATTTGACACCTGAGTATTTAGAGAAGAGAGGCTTCATTGAAGCACAATTTGATGATGGACTTTTAGAGATATTTGGTCTAAAACAAGGATGGCATGCAACATTTGTCATGAGTGAACTAATTTCTGCAAAGCATATAGCCCAGGCAACAGCTATTCGATTGGAAGTTAGAGGTGGGGAATGGAAAGATGCATTTATGCAAATGGATGGAGAACCCTGGAAACAACCTATGAGCAAGGACTTCTCCACTTTTGTGGAAATAAAAAGGGAACCTTTCCAATCAATCATGATTAATGGAGAATAA
>Glyma06g30185.1 sequence type=predicted peptide gene model=Glyma06g30185 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDPPSSSTMVPIKSSSSIVESLRGCGISGGTRVDKEELRKKLTMPKYLRFAMRDSIRFKDPAAGESRCIHSKDDHNAVAPSTPMVVFINPRSGGRHGPFLKERLQHLMSEEQVLDMLDVKPHEFLRYGLGCLEMLASLGDYCAKETRERIRIMVAGGDGSVGWVLGCLTELHAQGREPIPPVGIVPLGTGNDLSRSLGWGGSFPFSWKTAIKRSLYKASIGPICHLDSWRLSLSMPEGTIIEPPHSLKHTTEFTLDEGLEVERELSENVICYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPIANKIIYSGYSCTQGWFFTPCTSDPGLRGLKNILRMHVKKINCSEWEQVLVPTSVRAIVALNLHSYGSGRNPWGNLTPEYLEKRGFIEAQFDDGLLEIFGLKQGWHATFVMSELISAKHIAQATAIRLEVRGGEWKDAFMQMDGEPWKQPMSKDFSTFVEIKREPFQSIMINGE* >Glyma06g30185.2 sequence type=predicted peptide gene model=Glyma06g30185 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLDVKPHEFLRYGLGCLEMLASLGDYCAKETRERIRIMVAGGDGSVGWVLGCLTELHAQGREPIPPVGIVPLGTGNDLSRSLGWGGSFPFSWKTAIKRSLYKASIGPICHLDSWRLSLSMPEGTIIEPPHSLKHTTEFTLDEGLEVERELSENVICYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPIANKIIYSGYSCTQGWFFTPCTSDPGLRGLKNILRMHVKKINCSEWEQVLVPTSVRAIVALNLHSYGSGRNPWGNLTPEYLEKRGFIEAQFDDGLLEIFGLKQGWHATFVMSELISAKHIAQATAIRLEVRGGEWKDAFMQMDGEPWKQPMSKDFSTFVEIKREPFQSIMINGE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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