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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G18710 | AT | Annotation by Michelle Graham. TAIR10: SECY homolog 1 | chr2:8112231-8114452 REVERSE LENGTH=551 | SoyBase | E_val: 0 | ISS |
| GO:0006354 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation | SoyBase | N/A | ISS |
| GO:0009306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein secretion | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0015450 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | SoyBase | N/A | ISS |
| PTHR10906 | Panther | SECY/SEC61-ALPHA FAMILY MEMBER | JGI | ISS | |
| PTHR10906:SF2 | Panther | PROTEIN TRANSLOCASE SECY SUBUNIT | JGI | ISS | |
| PF00344 | PFAM | eubacterial secY protein | JGI | ISS | |
| UniRef100_B9T4L2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein translocase secy subunit, putative n=1 Tax=Ricinus communis RepID=B9T4L2_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KDG6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDG6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g30020 not represented in the dataset |
Glyma06g30020 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g223700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g30020.2 sequence type=transcript gene model=Glyma06g30020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGAGATTCCGTCACTCTACTCCTACACAGGCTACGCTGGCCAAGTGAAGAGAGTGTGTGGATAATAATGTTGATAACGGTTAGGGAAGCTTCTTCTTGTTCTTCTTCTCCCCTCAGCTTCTGGCTTAATCGTTTCAACGCAAAACCCTCCAAAACACTCAAAACAACATCCATTTGCCAAGCTAGTTTCTCTGTCCAAAGAAGACCCACTCATTCATGGAATACTCGCCATCTCTCTACCAGTGAGCTAGCAAATTTTGATCCCTTGGGTATTAACTCAGATTTATCTTCTGGTCTGAATTCTACCTGGAAAAATCTGGTGTGCTCAATTACACAAACATTTGAGAGTACTTCAAGTGCAGAAAAGGGAAAACCTAACTCTTCTCAAGGGGTAGCAGCTGCAATAGAGGATAGTTCAATAGATTTTGGTGACTTTTTTAAGGGCCCACTGCCAGGGAAGTTTCTCAAGCTTTTAGGGTTTCTTGCCTTGTCAAGGCTTGGAGTGTACATACCCCTAGGTGGAGTTAATAGGGAGGCTTTTGTTGGAAATTTGGATCAGAACAGTCTATTAAGCACTTTGGACTCGTTTTCTGGTGGTGGTATTGGTAGACTTGGGGTATGCTCCCTTGGCATTGTTCCCTTCATCAATGCACAGATTGTTTTCCAGCTTCTTGCACAAGTATATCCCAAATTGCAAGATCTTCAAAAGAGAGAAGGTGAGGCTGGAAGAAAGAAAGTTCTGCAGTACACTCGATATGCTTCAGTTGGATTTGCCATTGTGCAGGCAATTGGCCAAGTTCTTTTCCTACGTCCCTATGTCAATGACTTTTCTACAGAGTGGGTTATTTCTTCTGTTATCTTATTGACTCTTGGCTCTGTGTTTACAATGTACATCGGAGAACGAATTACAGACCTAAAACTTGGGAATGGCACCTCTCTTTTGATATTCACAAACATTATCTCGTACTTGCCAGCTTCTTTTGGTAGGACAATTGCTCAAGCATTTAATGATGCAAACTACATTGGACTTGGTACCATTGTTTTGTCCTTCTTTTTGTTGGTAGTTGGTATTGTTTATGTTCAGGAAGCAGAGAGAAAAATCCCGCTTAACTATGCTTCTAGATTCACCAGCAGAAGCACTGGTCTTGAAAAGTCCGCTTACCTACCCTTTAAGGTAAATAGTTCTGGAGTAATGCCTATCATATTTTCTACATCATCATTAGCTCTTCCTGGTACTTTAGCGCGCTTCACTGGTTTAACTGCACTAAAGAAGGCTGCAGTGGCGTTAAATCCAGGAGGTTCTTTCTACCTTCCATTTAACATACTTTTGATAGCCTTCTTCAACTACTATTACACTTTCCTACAACTGGACCCTGATGATGTGAGTGAACAATTGAAACGTCAAGGTGCTTCAATTCCACTTGTCAGACCAGGCAGAACTACAGCTACATTTATCAAAACAGTTCTTAGTAGAATATCAGTTCTGGGTTCAACATTTTTGGCTATCTTGGCTGCTGGTCCAGCAGTTGTTGAACAGATCACTCACTTGACCGCATTCCGGGGATTTGCAGGAACATCTATTCTTATTCTTGTTGGTTGTGCAACAGACACAGCAAGAAAAGTTCAAGCTGAGATTATATCCCAGAAATACAAGAACATAGAGTTCTATGATTTTGATAAATACTAACCGTTAAAGGAATGGTGGTTTACAAAACCTGAATTACGCAGCTTCTACATAATTCTCCAAAAGAGGAAATGTTGGAATGTAAGCCAATAGTCTCCAGCGTGTACAACAGTGTACCATTACATTAGTATCGGCTTGTAAATAATGCTGTATATAGCAGCGATTTGCTTTTATTTGTAGTTGAAGAGATTATTCTGAAAATGCATCCAGTTTGCGTAGTATCTGGATATCAATCAAAGGAAATGGATACAGAGAACTGGGCCTCAGGCATTACAATGATGTTTTAAGCATTTTCCCTCGTTAAATATTCTAAATATTTGTCTTTGTAGTAATTAAAGTTGTTCTTATCATATTTTACTTATCTCTTAACCGAAA
>Glyma06g30020.1 sequence type=CDS gene model=Glyma06g30020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGATAACGGTTAGGGAAGCTTCTTCTTGTTCTTCTTCTCCCCTCAGCTTCTGGCTTAATCGTTTCAACGCAAAACCCTCCAAAACACTCAAAACAACATCCATTTGCCAAGCTAGTTTCTCTGTCCAAAGAAGACCCACTCATTCATGGAATACTCGCCATCTCTCTACCAGCAGTGAGCTAGCAAATTTTGATCCCTTGGGTATTAACTCAGATTTATCTTCTGGTCTGAATTCTACCTGGAAAAATCTGGTGTGCTCAATTACACAAACATTTGAGAGTACTTCAAGTGCAGAAAAGGGAAAACCTAACTCTTCTCAAGGGGTAGCAGCTGCAATAGAGGATAGTTCAATAGATTTTGGTGACTTTTTTAAGGGCCCACTGCCAGGGAAGTTTCTCAAGCTTTTAGGGTTTCTTGCCTTGTCAAGGCTTGGAGTGTACATACCCCTAGGTGGAGTTAATAGGGAGGCTTTTGTTGGAAATTTGGATCAGAACAGTCTATTAAGCACTTTGGACTCGTTTTCTGGTGGTGGTATTGGTAGACTTGGGGTATGCTCCCTTGGCATTGTTCCCTTCATCAATGCACAGATTGTTTTCCAGCTTCTTGCACAAGTATATCCCAAATTGCAAGATCTTCAAAAGAGAGAAGGTGAGGCTGGAAGAAAGAAAGTTCTGCAGTACACTCGATATGCTTCAGTTGGATTTGCCATTGTGCAGGCAATTGGCCAAGTTCTTTTCCTACGTCCCTATGTCAATGACTTTTCTACAGAGTGGGTTATTTCTTCTGTTATCTTATTGACTCTTGGCTCTGTGTTTACAATGTACATCGGAGAACGAATTACAGACCTAAAACTTGGGAATGGCACCTCTCTTTTGATATTCACAAACATTATCTCGTACTTGCCAGCTTCTTTTGGTAGGACAATTGCTCAAGCATTTAATGATGCAAACTACATTGGACTTGGTACCATTGTTTTGTCCTTCTTTTTGTTGGTAGTTGGTATTGTTTATGTTCAGGAAGCAGAGAGAAAAATCCCGCTTAACTATGCTTCTAGATTCACCAGCAGAAGCACTGGTCTTGAAAAGTCCGCTTACCTACCCTTTAAGGTAAATAGTTCTGGAGTAATGCCTATCATATTTTCTACATCATCATTAGCTCTTCCTGGTACTTTAGCGCGCTTCACTGGTTTAACTGCACTAAAGAAGGCTGCAGTGGCGTTAAATCCAGGAGGTTCTTTCTACCTTCCATTTAACATACTTTTGATAGCCTTCTTCAACTACTATTACACTTTCCTACAACTGGACCCTGATGATGTGAGTGAACAATTGAAACGTCAAGGTGCTTCAATTCCACTTGTCAGACCAGGCAGAACTACAGCTACATTTATCAAAACAGTTCTTAGTAGAATATCAGTTCTGGGTTCAACATTTTTGGCTATCTTGGCTGCTGGTCCAGCAGTTGTTGAACAGATCACTCACTTGACCGCATTCCGGGGATTTGCAGGAACATCTATTCTTATTCTTGTTGGTTGTGCAACAGACACAGCAAGAAAAGTTCAAGCTGAGATTATATCCCAGAAATACAAGAACATAGAGTTCTATGATTTTGATAAATACTAA >Glyma06g30020.2 sequence type=CDS gene model=Glyma06g30020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGATAACGGTTAGGGAAGCTTCTTCTTGTTCTTCTTCTCCCCTCAGCTTCTGGCTTAATCGTTTCAACGCAAAACCCTCCAAAACACTCAAAACAACATCCATTTGCCAAGCTAGTTTCTCTGTCCAAAGAAGACCCACTCATTCATGGAATACTCGCCATCTCTCTACCAGTGAGCTAGCAAATTTTGATCCCTTGGGTATTAACTCAGATTTATCTTCTGGTCTGAATTCTACCTGGAAAAATCTGGTGTGCTCAATTACACAAACATTTGAGAGTACTTCAAGTGCAGAAAAGGGAAAACCTAACTCTTCTCAAGGGGTAGCAGCTGCAATAGAGGATAGTTCAATAGATTTTGGTGACTTTTTTAAGGGCCCACTGCCAGGGAAGTTTCTCAAGCTTTTAGGGTTTCTTGCCTTGTCAAGGCTTGGAGTGTACATACCCCTAGGTGGAGTTAATAGGGAGGCTTTTGTTGGAAATTTGGATCAGAACAGTCTATTAAGCACTTTGGACTCGTTTTCTGGTGGTGGTATTGGTAGACTTGGGGTATGCTCCCTTGGCATTGTTCCCTTCATCAATGCACAGATTGTTTTCCAGCTTCTTGCACAAGTATATCCCAAATTGCAAGATCTTCAAAAGAGAGAAGGTGAGGCTGGAAGAAAGAAAGTTCTGCAGTACACTCGATATGCTTCAGTTGGATTTGCCATTGTGCAGGCAATTGGCCAAGTTCTTTTCCTACGTCCCTATGTCAATGACTTTTCTACAGAGTGGGTTATTTCTTCTGTTATCTTATTGACTCTTGGCTCTGTGTTTACAATGTACATCGGAGAACGAATTACAGACCTAAAACTTGGGAATGGCACCTCTCTTTTGATATTCACAAACATTATCTCGTACTTGCCAGCTTCTTTTGGTAGGACAATTGCTCAAGCATTTAATGATGCAAACTACATTGGACTTGGTACCATTGTTTTGTCCTTCTTTTTGTTGGTAGTTGGTATTGTTTATGTTCAGGAAGCAGAGAGAAAAATCCCGCTTAACTATGCTTCTAGATTCACCAGCAGAAGCACTGGTCTTGAAAAGTCCGCTTACCTACCCTTTAAGGTAAATAGTTCTGGAGTAATGCCTATCATATTTTCTACATCATCATTAGCTCTTCCTGGTACTTTAGCGCGCTTCACTGGTTTAACTGCACTAAAGAAGGCTGCAGTGGCGTTAAATCCAGGAGGTTCTTTCTACCTTCCATTTAACATACTTTTGATAGCCTTCTTCAACTACTATTACACTTTCCTACAACTGGACCCTGATGATGTGAGTGAACAATTGAAACGTCAAGGTGCTTCAATTCCACTTGTCAGACCAGGCAGAACTACAGCTACATTTATCAAAACAGTTCTTAGTAGAATATCAGTTCTGGGTTCAACATTTTTGGCTATCTTGGCTGCTGGTCCAGCAGTTGTTGAACAGATCACTCACTTGACCGCATTCCGGGGATTTGCAGGAACATCTATTCTTATTCTTGTTGGTTGTGCAACAGACACAGCAAGAAAAGTTCAAGCTGAGATTATATCCCAGAAATACAAGAACATAGAGTTCTATGATTTTGATAAATACTAA
>Glyma06g30020.1 sequence type=predicted peptide gene model=Glyma06g30020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLITVREASSCSSSPLSFWLNRFNAKPSKTLKTTSICQASFSVQRRPTHSWNTRHLSTSSELANFDPLGINSDLSSGLNSTWKNLVCSITQTFESTSSAEKGKPNSSQGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGVCSLGIVPFINAQIVFQLLAQVYPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLFLRPYVNDFSTEWVISSVILLTLGSVFTMYIGERITDLKLGNGTSLLIFTNIISYLPASFGRTIAQAFNDANYIGLGTIVLSFFLLVVGIVYVQEAERKIPLNYASRFTSRSTGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLTALKKAAVALNPGGSFYLPFNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGRTTATFIKTVLSRISVLGSTFLAILAAGPAVVEQITHLTAFRGFAGTSILILVGCATDTARKVQAEIISQKYKNIEFYDFDKY* >Glyma06g30020.2 sequence type=predicted peptide gene model=Glyma06g30020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLITVREASSCSSSPLSFWLNRFNAKPSKTLKTTSICQASFSVQRRPTHSWNTRHLSTSELANFDPLGINSDLSSGLNSTWKNLVCSITQTFESTSSAEKGKPNSSQGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGVCSLGIVPFINAQIVFQLLAQVYPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLFLRPYVNDFSTEWVISSVILLTLGSVFTMYIGERITDLKLGNGTSLLIFTNIISYLPASFGRTIAQAFNDANYIGLGTIVLSFFLLVVGIVYVQEAERKIPLNYASRFTSRSTGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLTALKKAAVALNPGGSFYLPFNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGRTTATFIKTVLSRISVLGSTFLAILAAGPAVVEQITHLTAFRGFAGTSILILVGCATDTARKVQAEIISQKYKNIEFYDFDKY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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