SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G30860 | AT | Annotation by Michelle Graham. TAIR10: SET domain group 4 | chr4:15024546-15027427 FORWARD LENGTH=497 | SoyBase | E_val: 0 | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0016458 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0000785 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromatin | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0018024 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone-lysine N-methyltransferase activity | SoyBase | N/A | ISS |
| KOG1081 | KOG | Transcription factor NSD1 and related SET domain proteins | JGI | ISS | |
| PTHR22884 | Panther | SET DOMAIN PROTEINS | JGI | ISS | |
| PTHR22884:SF35 | Panther | SET DOMAIN PROTEIN | JGI | ISS | |
| PF00856 | PFAM | SET domain | JGI | ISS | |
| UniRef100_B9IM92 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SET domain protein n=1 Tax=Populus trichocarpa RepID=B9IM92_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339E50 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339E50 related cluster n=1 Tax=unknown RepID=UPI0002339E50 | SoyBase | E_val: 0 | ISS |
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Glyma06g29960 not represented in the dataset |
Glyma06g29960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g223300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g29960.2 sequence type=CDS gene model=Glyma06g29960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCCCCTTGGGTAGTTTCACATCACCCCCTGAAAATTACAAAACCACACTTTCCCGCCCACTTCTACCTCCTACTCCTCCTCTTCTTTTCTTCTTCAGCTTCTCCTTTCTCTCTCTGCATCTTTTCCCTACCCTCTGCCTCTGTCGGCAAGTTTCCTCTAAGGGTTTCGGCGATGCCAGATTTGGGAAACCTTTCTCTCTCCGCGCCTCTCACACTCTCTCGCTGCTCCTCCAATGATGCCCTTGACGCTCCCGTCAAAACCCTACCCAATGCTTTCAGTTCCGAGCCTGGTTCCGAACCTGCCTTTGAGCCTCGGGTTTTGAAGCGCACCCGAGGCTCCCTGGATCGGGTCAAGAAGCCCCCCATCGCCGACAAGGCCTTCCAGGATCGCCTCAAAGATCTTCCTTTTCTAGTTGGCGCTCCCATGATGGAAGAATGTTGTTTTTGCTGCCATTTTATTTACCCTGGTGATGATGAGCTCTTGTGTTCGGTTCGAGGATGTGACGCACGCTACCATTCTGAATGTGCAAAAGATGCTGTTGGGGCTTCCAATCTGAAAAAATTCAAGTGTCCACAACATGTGTGCTTCATTTGCAAGCTAAAGAAGCAGTTTAGGTGTGTTAGGTGTAAAATAGCATTCCATAGTAAATGTGCACCATGGTCAGATTCAGTGGTGCAACTAAAAGATCATCCCGGGCAAGCTGTTTGCTGGAGGCATCCTTCTGATTGGCGCTTGGATAGAAAGACTGATGCTTCAACAAGTGACATTTCGGAAGTATTTTGTCGCTTGCCTCTTCCATTTATCAGTGAGGAGTTTAAGATTGACTTCACTTGGAAAGACATGGACAATAAGATGGAGCAGCCATCACCATATGTACACATAAGACGCAATATATACTTAGTAAAGAAGAAACGTAGTGATGCGGATGATGGTGCAGGGTGCACCAGTTGCAGTTCTACTTCTACATGTTCTGATGATTGTGTGTGCAGGGTTCAATGCATAAGCTGTTCAAAGGCATGTCGCTGCTCAGAAAATTGCAACAATCGACCATTTCGCAAGGAGAAAAAGATCAAGATTGTCAAGACTGAACTTTGTGGATGGGGAGTGGAGGCCGCTGAAACAATTGATAAAGGTGGATTTATAATTGAGTATATTGGAGAAGTCATTGACGATGCTTTATGTGAAAAAAGGCTTTGGGACATGAAATACAGGGGTGTACAGAATTTTTACATGTGTGAGATTCGGAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATACTTCACGCTTTTTGAACCATAGCTGTGATCCCAACTGTGTTTTGGAGAAGTGGCAAGTTGATGGTGAAACACGTGTGGGTGTATTTGCCGCTTGTTCAATAGAAGCTGGAGAGCCGTTAACATATGATTACAGATTTGTGCAATTTGGTCCAGAGGTGAAATGCCACTGTGGTGCTGCAAATTGTCAAGGCTTTCTAGGGACAAAAAAGAAAATTGGCAAGCTAGACCTCTATTGGGGTTCAAAACGTAAGAGAACATCGAAAGCTTCTTGCATTACGTTAGTAACAGCTGTATGA
>Glyma06g29960.2 sequence type=predicted peptide gene model=Glyma06g29960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPPWVVSHHPLKITKPHFPAHFYLLLLLFFSSSASPFSLCIFSLPSASVGKFPLRVSAMPDLGNLSLSAPLTLSRCSSNDALDAPVKTLPNAFSSEPGSEPAFEPRVLKRTRGSLDRVKKPPIADKAFQDRLKDLPFLVGAPMMEECCFCCHFIYPGDDELLCSVRGCDARYHSECAKDAVGASNLKKFKCPQHVCFICKLKKQFRCVRCKIAFHSKCAPWSDSVVQLKDHPGQAVCWRHPSDWRLDRKTDASTSDISEVFCRLPLPFISEEFKIDFTWKDMDNKMEQPSPYVHIRRNIYLVKKKRSDADDGAGCTSCSSTSTCSDDCVCRVQCISCSKACRCSENCNNRPFRKEKKIKIVKTELCGWGVEAAETIDKGGFIIEYIGEVIDDALCEKRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCVLEKWQVDGETRVGVFAACSIEAGEPLTYDYRFVQFGPEVKCHCGAANCQGFLGTKKKIGKLDLYWGSKRKRTSKASCITLVTAV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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