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Report for Sequence Feature Glyma06g29917

Feature Type:gene_model
Chromosome:Gm06
Start:28606596
stop:28607884
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g29917
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16840AT Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:5738020-5743042 REVERSE LENGTH=826 SoyBaseE_val: 7.00E-41ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0004386GO-mf Annotation by Michelle Graham. GO Molecular Function: helicase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008026GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity SoyBaseN/AISS
PTHR24031Panther FAMILY NOT NAMED JGI ISS
PTHR24031:SF20Panther SUBFAMILY NOT NAMED JGI ISS
PF00271PFAM Helicase conserved C-terminal domain JGI ISS
UniRef100_G7L177UniRef Annotation by Michelle Graham. Most informative UniRef hit: DEAD-box ATP-dependent RNA helicase n=1 Tax=Medicago truncatula RepID=G7L177_MEDTR SoyBaseE_val: 6.00E-69ISS
UniRef100_I1JKC4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JKC4_SOYBN SoyBaseE_val: 4.00E-76ISS

Expression Patterns of Glyma06g29917
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g29917 not represented in the dataset
Glyma06g29917 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g29917 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g223200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g29917
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g29917
>Glyma06g29917.1   sequence type=CDS   gene model=Glyma06g29917   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGCTTTCATGAAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCAAGGGGTCTTGATATTCTTGGTGTTAGAATTGTTGTCCACTATCAGCTTCCACATTCAGCAGAGGGTTATGTTCATAGAAGTGGAAGAACAACCAGAGCTTTTGCTGAAGGTTGTAGTATTGCTTTAATATCATCAAGAGATACATCAAAGTTTGTTTCATTGTGCAAGTCATTTTCCAAGGATAAGAAAAATTGGTTTGATCGGAATGCTAGCTCACTGGAATTAGTTACAGAAAATTATGACAGTGAAGAGGCACAAGTGAACAAACATAAGCAAATGAAGACCATCTCTAGACAATTGAAGAAATTGCAAAAGGAGCTCGAAATGTTGATTTTACATCCATTACAATCAAAAACATTTTTGCATCGATATTTAGCAGGGGCATTATCCTTATTATTGATGGTTCTAAAGGAGATACAAACACTATTGCAAAAAGGCTATACAAAGATGGTTCTAAAGGAGATACAAACACGATTTTGA
Predicted protein sequences of Glyma06g29917
>Glyma06g29917.1   sequence type=predicted peptide   gene model=Glyma06g29917   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRFHENENGILVATDVAARGLDILGVRIVVHYQLPHSAEGYVHRSGRTTRAFAEGCSIALISSRDTSKFVSLCKSFSKDKKNWFDRNASSLELVTENYDSEEAQVNKHKQMKTISRQLKKLQKELEMLILHPLQSKTFLHRYLAGALSLLLMVLKEIQTLLQKGYTKMVLKEIQTRF*






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