Glyma06g29686 - SoyBase

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Report for Sequence Feature Glyma06g29686

Feature Type:	gene_model
Chromosome:	Gm06
Start:	28244756
stop:	28248156
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g29686

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66520	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:26551879-26553741 FORWARD LENGTH=620	SoyBase	E_val: 3.00E-119	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF47	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_D2STE4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat protein n=1 Tax=Gossypium hirsutum RepID=D2STE4_GOSHI	SoyBase	E_val: 4.00E-132	ISS
UniRef100_I1KDF8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KDF8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g29686

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g29686 not represented in the dataset	Glyma06g29686 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g29686 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g222600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g29686

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g29686

Limit To All Plant Sequences

>Glyma06g29686.2   sequence type=transcript   gene model=Glyma06g29686   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTTTTATCTGCTCACTTGTTTTGTTGTTTTGGGTGCTTAGAAGAGAAGAGAAATGCCCTGTCCCTCCATTCGATGTTGTTCACATGATCGTTAAGAAGGGCTTCCTCACCACCGTGGCGCAAAAATGCAACACCCTAACCCAACTCAAGCAGCTCCACGCCCACATCCTCCGATGCCGCATCAACGACACGCCTTACGCCCTCGCCCCGCTTCTCTCCGTCCTAGCCACCTCCAACGACGCGTCGTTCTTCTCCTACGCTCGCTCCATCTTCCGCCACCTCACTAACCGCAACACCTTCATGCACAACACCATGATCCGCGGCTACCTCCAATGCCGGTCACCCCTCCACGCCGTGTCCTGCTACTTGTCCATGCTCCAAAACGGCGTTGCCGTTAACAACTACACGTTCCCACCTTTAATCAAAGCCTGCATTGCGCTTCTTCCTTCTTCTCCTTCGAACATTGTTGGTCGTTTGGTGCACGGTCATGTCGTTAAGTTCGGTCTCCGCAACGACCCTTACGTGGTGAGCGCGTTTATTGAGTTTTACTCCGTTTCTCGCGAGGTGGACACCGCGAGAGTGTTGTTTGATGAAACGTCATATAAAGATGTGGTTTTGGGAACTGCGATGGTTGACGGTTATGGCAAAATGGGGAATGTGAAGAGTGCAAGAGAGGTGTTTGATAAAATGCCTGAGAGAAACGCTGTGTCGTGGAGTGCCATGATGGCGGCATATTCTCGTGTCAGTGACTTCAAGGAAGTGCTGGCTTTGTTTACAGAGATGCAGAACGAGGGAACTGAGCCAAACGAGTCTATACTCGTTACGGTACTTACTGCGTGTGCGCACCTTGGCGCACTCACGCAGGGACTGTGGGTGCATTCCTATGCAAGACGATTCCATCTTGAGTCGAATCCGATTCTGGCCACGGCTTTGGTGGACATGTATTCGAAATGTGGATGTGTGGAATCTGCTTTATCTGTTTTTGATTGCATTGTCGACAAGGACGCTGGCGCGTGGAATGCTATGATTTCAGGCGAGGCATTGAATGGCGATGCAGGGAAATCGTTGCAGTTGTTTCGCCAAATGGCTGCTTCCAGGACCAAGCCGAACGAGACTACGTTTGTGGCTGTCCTCACTGCTTGTACTCATGCAAAGATGGTTCAGCAGGGCCTTTGGTTGTTTGAAGAAATGAGTAGCGTGTATGGAGTTGTGCCACGAATGGAGCATTATGCATGTGTTATTGACCTTTTGTCGAGAGCTGGGATGGTGGAGGAGGCTGAGAAATTTATGGAGGAGAAGATGGGTGGACTCACAGCTGGTGATGCTAACGTGTGGGGTGCTCTTCTGAATGCGTGTAGAATACATAAGAATATTCATGTTGGGAATAGGGTGTGGAAAAAGCTGGTTGATATGGGGGTCACTGACTGTGGTACTCATGTTCTTACTTACAATATATATAGAGAAGCTGGGTGGGATGTGGAGGCAAACAAAGTTAGGAGTAGGATTGAAGAAGTAGGGATGAAAAAGAAGCCCGGATGCAGCATAATAGAGGTGGATAATGAAGTTGAAGAGTTTCTTGCAGGCGATCATTCTCATCCACAAGCACAGGAAATGTGCAAATTGCTCGATTCCATTCTCAAGATGGGGACTTTAGAGCACTTCTGATGGCAACCTTGGGCATCAACTGAAGAAATGAATTTTTCACCTCAGTTGTTAGATGATGGAAGAGCAGCAATGAGCATAATAGGCATTCCAAACTCGTGTCAAGAACACTGATTTGCGTGAAAATTTTCTGCTGATAATAAACCATTGATAAGGCGTCCAAGCCTTTCAGCTCCAGGGCCAGGCCTTAGGTCAGTGATATTTCTTATGCCAGAATACTTATTAGTGATGCTTGAATTTGCTTGACTGAACCACCTGCCAGGAACATAACCAACTGCATTTTGTCCCAAGAGTTCAGTATCAATCTTATCCAAGACTGGTTCGTTCCTGCCAAATTTCCTAGCAAAAGGAGCATTGCTGTCCACCATTTTCTGGTAGTCATCAACTGTAAGAAAATGCGGGTGTTGTTTTGGAGGGTTGTCCCATGATATGAAGTGGAGGTCGTGATTAACGGTAGTGTTTCGAAACTCGTCAGCATTGCAGATGACTGTGTGAAAATACCCTTCCGGGGAAGACAGAAAGTTGGCATAATACATCAAGACTATTCTAGGTAAGTTGTCCCACCCCCATATACAGTATTCAATAAATGGGCGAGAGAGCATCATCCAGGCAGAAC

Coding sequences of Glyma06g29686

Limit To All Plant Sequences

>Glyma06g29686.1   sequence type=CDS   gene model=Glyma06g29686   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTTTTATCTGCTCACTTGTTTTGTTGTTTTGGGTGCTTAGAAGAGAAGAGAAATGCCCTGTCCCTCCATTCGATGTTGTTCACATGATCGTTAAGAAGGGCTTCCTCACCACCGTGGCGCAAAAATGCAACACCCTAACCCAACTCAAGCAGCTCCACGCCCACATCCTCCGATGCCGCATCAACGACACGCCTTACGCCCTCGCCCCGCTTCTCTCCGTCCTAGCCACCTCCAACGACGCGTCGTTCTTCTCCTACGCTCGCTCCATCTTCCGCCACCTCACTAACCGCAACACCTTCATGCACAACACCATGATCCGCGGCTACCTCCAATGCCGGTCACCCCTCCACGCCGTGTCCTGCTACTTGTCCATGCTCCAAAACGGCGTTGCCGTTAACAACTACACGTTCCCACCTTTAATCAAAGCCTGCATTGCGCTTCTTCCTTCTTCTCCTTCGAACATTGTTGGTCGTTTGGTGCACGGTCATGTCGTTAAGTTCGGTCTCCGCAACGACCCTTACGTGGTGAGCGCGTTTATTGAGTTTTACTCCGTTTCTCGCGAGGTGGACACCGCGAGAGTGTTGTTTGATGAAACGTCATATAAAGATGTGGTTTTGGGAACTGCGATGGTTGACGGTTATGGCAAAATGGGGAATGTGAAGAGTGCAAGAGAGGTGTTTGATAAAATGCCTGAGAGAAACGCTGTGTCGTGGAGTGCCATGATGGCGGCATATTCTCGTGTCAGTGACTTCAAGGAAGTGCTGGCTTTGTTTACAGAGATGCAGAACGAGGGAACTGAGCCAAACGAGTCTATACTCGTTACGGTACTTACTGCGTGTGCGCACCTTGGCGCACTCACGCAGGGACTGTGGGTGCATTCCTATGCAAGACGATTCCATCTTGAGTCGAATCCGATTCTGGCCACGGCTTTGGTGGACATGTATTCGAAATGTGGATGTGTGGAATCTGCTTTATCTGTTTTTGATTGCATTGTCGACAAGGACGCTGGCGCGTGGAATGCTATGATTTCAGGCGAGGCATTGAATGGCGATGCAGGGAAATCGTTGCAGTTGTTTCGCCAAATGGCTGCTTCCAGGACCAAGCCGAACGAGACTACGTTTGTGGCTGTCCTCACTGCTTGTACTCATGCAAAGATGGTTCAGCAGGGCCTTTGGTTGTTTGAAGAAATGAGTAGCGTGTATGGAGTTGTGCCACGAATGGAGCATTATGCATGTGTTATTGACCTTTTGTCGAGAGCTGGGATGGTGGAGGAGGCTGAGAAATTTATGGAGGAGAAGATGGGTGGACTCACAGCTGGTGATGCTAACGTGTGGGGTGCTCTTCTGAATGCGTGTAGAATACATAAGAATATTCATGTTGGGAATAGGGTGTGGAAAAAGCTGGTTGATATGGGGGTCACTGACTGTGGTACTCATGTTCTTACTTACAATATATATAGAGAAGCTGGGTGGGATGTGGAGGCAAACAAAGTTAGGAGTAGGATTGAAGAAGTAGGGATGAAAAAGAAGCCCGGATGCAGCATAATAGAGGTGGATAATGAAGTTGAAGAGTTTCTTGCAGGCGATCATTCTCATCCACAAGCACAGGAAATGTGCAAATTGCTCGATTCCATTCTCAAGATGGGGACTTTAGAGCACTTCTGA

>Glyma06g29686.2   sequence type=CDS   gene model=Glyma06g29686   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTTTTATCTGCTCACTTGTTTTGTTGTTTTGGGTGCTTAGAAGAGAAGAGAAATGCCCTGTCCCTCCATTCGATGTTGTTCACATGATCGTTAAGAAGGGCTTCCTCACCACCGTGGCGCAAAAATGCAACACCCTAACCCAACTCAAGCAGCTCCACGCCCACATCCTCCGATGCCGCATCAACGACACGCCTTACGCCCTCGCCCCGCTTCTCTCCGTCCTAGCCACCTCCAACGACGCGTCGTTCTTCTCCTACGCTCGCTCCATCTTCCGCCACCTCACTAACCGCAACACCTTCATGCACAACACCATGATCCGCGGCTACCTCCAATGCCGGTCACCCCTCCACGCCGTGTCCTGCTACTTGTCCATGCTCCAAAACGGCGTTGCCGTTAACAACTACACGTTCCCACCTTTAATCAAAGCCTGCATTGCGCTTCTTCCTTCTTCTCCTTCGAACATTGTTGGTCGTTTGGTGCACGGTCATGTCGTTAAGTTCGGTCTCCGCAACGACCCTTACGTGGTGAGCGCGTTTATTGAGTTTTACTCCGTTTCTCGCGAGGTGGACACCGCGAGAGTGTTGTTTGATGAAACGTCATATAAAGATGTGGTTTTGGGAACTGCGATGGTTGACGGTTATGGCAAAATGGGGAATGTGAAGAGTGCAAGAGAGGTGTTTGATAAAATGCCTGAGAGAAACGCTGTGTCGTGGAGTGCCATGATGGCGGCATATTCTCGTGTCAGTGACTTCAAGGAAGTGCTGGCTTTGTTTACAGAGATGCAGAACGAGGGAACTGAGCCAAACGAGTCTATACTCGTTACGGTACTTACTGCGTGTGCGCACCTTGGCGCACTCACGCAGGGACTGTGGGTGCATTCCTATGCAAGACGATTCCATCTTGAGTCGAATCCGATTCTGGCCACGGCTTTGGTGGACATGTATTCGAAATGTGGATGTGTGGAATCTGCTTTATCTGTTTTTGATTGCATTGTCGACAAGGACGCTGGCGCGTGGAATGCTATGATTTCAGGCGAGGCATTGAATGGCGATGCAGGGAAATCGTTGCAGTTGTTTCGCCAAATGGCTGCTTCCAGGACCAAGCCGAACGAGACTACGTTTGTGGCTGTCCTCACTGCTTGTACTCATGCAAAGATGGTTCAGCAGGGCCTTTGGTTGTTTGAAGAAATGAGTAGCGTGTATGGAGTTGTGCCACGAATGGAGCATTATGCATGTGTTATTGACCTTTTGTCGAGAGCTGGGATGGTGGAGGAGGCTGAGAAATTTATGGAGGAGAAGATGGGTGGACTCACAGCTGGTGATGCTAACGTGTGGGGTGCTCTTCTGAATGCGTGTAGAATACATAAGAATATTCATGTTGGGAATAGGGTGTGGAAAAAGCTGGTTGATATGGGGGTCACTGACTGTGGTACTCATGTTCTTACTTACAATATATATAGAGAAGCTGGGTGGGATGTGGAGGCAAACAAAGTTAGGAGTAGGATTGAAGAAGTAGGGATGAAAAAGAAGCCCGGATGCAGCATAATAGAGGTGGATAATGAAGTTGAAGAGTTTCTTGCAGGCGATCATTCTCATCCACAAGCACAGGAAATGTGCAAATTGCTCGATTCCATTCTCAAGATGGGGACTTTAGAGCACTTCTGA

Predicted protein sequences of Glyma06g29686

Limit To All Plant Sequences

>Glyma06g29686.1   sequence type=predicted peptide   gene model=Glyma06g29686   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
PFICSLVLLFWVLRREEKCPVPPFDVVHMIVKKGFLTTVAQKCNTLTQLKQLHAHILRCRINDTPYALAPLLSVLATSNDASFFSYARSIFRHLTNRNTFMHNTMIRGYLQCRSPLHAVSCYLSMLQNGVAVNNYTFPPLIKACIALLPSSPSNIVGRLVHGHVVKFGLRNDPYVVSAFIEFYSVSREVDTARVLFDETSYKDVVLGTAMVDGYGKMGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQNEGTEPNESILVTVLTACAHLGALTQGLWVHSYARRFHLESNPILATALVDMYSKCGCVESALSVFDCIVDKDAGAWNAMISGEALNGDAGKSLQLFRQMAASRTKPNETTFVAVLTACTHAKMVQQGLWLFEEMSSVYGVVPRMEHYACVIDLLSRAGMVEEAEKFMEEKMGGLTAGDANVWGALLNACRIHKNIHVGNRVWKKLVDMGVTDCGTHVLTYNIYREAGWDVEANKVRSRIEEVGMKKKPGCSIIEVDNEVEEFLAGDHSHPQAQEMCKLLDSILKMGTLEHF*

>Glyma06g29686.2   sequence type=predicted peptide   gene model=Glyma06g29686   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
PFICSLVLLFWVLRREEKCPVPPFDVVHMIVKKGFLTTVAQKCNTLTQLKQLHAHILRCRINDTPYALAPLLSVLATSNDASFFSYARSIFRHLTNRNTFMHNTMIRGYLQCRSPLHAVSCYLSMLQNGVAVNNYTFPPLIKACIALLPSSPSNIVGRLVHGHVVKFGLRNDPYVVSAFIEFYSVSREVDTARVLFDETSYKDVVLGTAMVDGYGKMGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQNEGTEPNESILVTVLTACAHLGALTQGLWVHSYARRFHLESNPILATALVDMYSKCGCVESALSVFDCIVDKDAGAWNAMISGEALNGDAGKSLQLFRQMAASRTKPNETTFVAVLTACTHAKMVQQGLWLFEEMSSVYGVVPRMEHYACVIDLLSRAGMVEEAEKFMEEKMGGLTAGDANVWGALLNACRIHKNIHVGNRVWKKLVDMGVTDCGTHVLTYNIYREAGWDVEANKVRSRIEEVGMKKKPGCSIIEVDNEVEEFLAGDHSHPQAQEMCKLLDSILKMGTLEHF*

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