SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G51200 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3414) | chr5:20804926-20819408 FORWARD LENGTH=1838 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005635 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1835 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PF11894 | PFAM | Protein of unknown function (DUF3414) | JGI | ISS | |
| UniRef100_G7L0K5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Nuclear pore complex protein Nup205 n=1 Tax=Medicago truncatula RepID=G7L0K5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_G7L0K5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclear pore complex protein Nup205 n=1 Tax=Medicago truncatula RepID=G7L0K5_MEDTR | SoyBase | E_val: 0 | ISS |
|
Glyma06g29565 not represented in the dataset |
Glyma06g29565 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g222100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g29565.1 sequence type=CDS gene model=Glyma06g29565 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGTCTCCGAAGCAGCTCCTGGGCACCATCGAATCTGCGCTTCTCGGCACTTCGCCTCCGATGGCGGCGCACCGCGTCGAACTCTTGCACGCTCTCCGCACTTCTCGAACCTCCTTGCAGTCCCTTCTCTCGTATCCCCCCCCAAAGCCCTCTGATCGAAGTCAAGTTCAGTCAAAGTCAGTCAGACTTCCTGATTCTCCTCCTATTTCACTTGATGACCAGGATGTTCACATTGCGCTCAAATTGAGTGACGATCTCCATCTCAATGAAGTAGATTGTGTTCGTTTGCTTGTATCAGCTAATAAAGAGTGGGGCTTAATGGGAAGGGAACCACTGGAAATTTTACGGCTTGCAGCAGGACTCTGGTATACAGAGAGAAGAGATTTGATAACGTCCCTCCATTTGCTCTTAAGGGCTGTGGTGCTAGATCAGGGACTGCAAGATGATATATTGGTAGACATTCAAAAGTATTTGGAAGATCTTATCAGTTCTGGACTTAGACAGCGGTTGATTTCTCTTATCAAGGAACTCAATAGAGAAGAGCCTTCTGGTTTGGGTGGTCCTCAGTGTGAGAGTTATGTTCTTGATTCAAGAGGCTCTCTTGTGGAGAGGCAGGCAGTGGTCTCTAGAGAAAGACTTATTCTGGGGCATTGTCTTGTGCTTTCGATTCTGGTTGTTCGGACATGCCCGAAGGATATAAAAGATATTTTTTCTGTTTTGAAGGATAGTGCTTCTGAAGTTAGTGAGAGCAATGCCACTGTAAAACATCAGATTACCTTTTGTCTTCTCTTTGCTCTTGTGATTGCTTTTGTTTCTGATGGTTTGAGTACAGTGCCTGATAAAGCATCTGTCCTTTCTTCTAATACTTCCTTCAGACACGAATTTCATGAACTTGTAATGACTACTGGGAATGATCCACATGTTGAGGGCTTTGTTGGTGGCATAAGGCTTGCTTGGGTGGTACATTTGATGTTAATACAAGATGGTGTTCCAGCTAGAGAGACTATTTCAAGTGGTTCATCAAATGAACTGGGTTATCTTAGTCAATGCTTGGAAGCCATTTTCTCAAATAATGTTTTTCAGTTTTTACTTGATAAAGTTCTTCGTACTGCTTCCTTCCAGACTGAAGACGAAGATATGATCTACATGTACAATGCTTATCTGCACAAGCTGATTACGTGCTTCTTGTCTAACCCTCTTGCAAGAGACAAGATAAAAGAATCCAAGGAGCGGATTATGAGTGTGCTTAGTCCATACCGAGTTGTGGGATCACATGATTTTGCACAGGACAGTAATTCAAGTTCTCTACATGGCACTGAGATGGGCCCTTTACCATTTAATTCAATCTTGGACTTTGTGAGCGAAATTTATCAGAAAGAACCAGAGCTCTTGTCGGGCAATGATGTGTTGTGGACGTTTGTAAATTTTGCTGGAGAGGACCATACGAATTTCCAAACGCTTGTGGCGTTCTTGAATATGCTGAGCACCTTGGCTTGTAGTCAAGAAGGTGCTTCAAAGGTTTACGAGTTGCTGCAAGGTAAAGCATTCCGTTCAATTGGATGGAGCACTTTATTTGAATGCTTAACAATTTATGATGAGAAATTCAAACAGTCTCTTCAAACTGCGGGAGCAATGCTGCCTGAAATTCAGGAGGGGGATGCCAAAGCCCTTGTGGCATACTTGAATATTCTAAAGAAGGTTGTAGAAAATGGGAACCCAACAGAAAGGAAAACCTGGTTTCCTGATATTGAACCATTGTTCAAACTTCTTAGTTACGAAAATGTACCCCCTTATCTTAAGGGTGCTCTAAGGAATGCAATAGCCACATTTATTAAGGTCTCTCCAGTGCTGAAGGATAGCATCTGGACCTATCTTGAGCAATATGATCTGCCAGTGGTTGTTGGGCTTGATATCCCAAACAGTCCACAATCTATGGGTACTCAGGTTTATGATATGCAATTTGAACTGAACGAGATTGAAGCAAGGAGAGAACAATATCCTTCAACTATATCTTTCCTTAATTTGATAAATGCTCTAATTGCAGAAGAAAGAGATTTGTCTGATAGAGGGCGAAGATTTATTGGAATATTTAGGTTCATCTATGATCATGTTTTTGGGCCATTTCCTCAGAGAGCCTATGCGGATCCCTGTGAAAAATGGCAGTTAGTTGGTGCATGCCTTAAACATTTTCACATGGTATTAAGCATGTACGACATCAAGGATGAGGACTACGAGGGTGTAGTTGATCAGTCACGACTTTCAGCAACTAAAGAATCATCACCACTTCAGACACAGCTCCCAGTTTTAGAGTTGCTGAAAGATTTCATGAGTGGAAAGACTGCCTTCCGGAACATAATGAGTATTCTTCTGCCAGGGGTGAATTCTGTTATTGCTGAACGCAGTAGTCAATTATATGGGCAACTTTTAGAGAATGCAGTGCAGCTTTCTCTGGAAATTATAATCCTTGTCCTTGACAAAGATTTACTTCTTTCTGATTATTGGCGTCCTCTATACCAGCCATTAGATATTATACTCTCCCATGATCATAATCAAATAGTGGCCCTGTTGGAGTATGTCAGATATGATTTTCAGCCAAAAGTTCAGCAATCCTCCATCAAAATCATGAGTATTTTAAGCTCTCGCATGGTTGGGCTTGTTCAACTATTGCTAAAATCTAATGCATCAAACAGCTTGATAGAAGATTATGCAGCCTGCCTTGAGTTACGGTCAGAAGAGCTTCAGAATCTTGAAAATAACAATGATGATCCAGGCATTCTTATTATGCAACTTCTAATTGACAATATCAGCCGGCCAGCCCCTAATATCACTCATTTACTGCTTAAATTTGATCTAGACACACCTATTGAGCGGACAGTTTTACAGCCTAAATTTTATTACAGTTGCATGAAGGTTATTCTTGATATCCTGGAAAAGCTTTTGAAGCCTGGTGTAAATGCATTACTTCATGAATTTGGTTTTCAGCTGCTTTATGAATTGTGTGTAGATCCACTAACAAGTGGACCAACAATGGATCTGTTGTCAAATAAAAAGTACCTATTCTTTGTTAAGCACCTTGATACAATTGGTATTGCCCCACTTCCTAAACGAAATAGCAACCAGTCACTTCGAAACAGTTCCCTTCATCAGAGAGCATGGCTTTTGAAACTTTTAGCGGTTGAACTACATGCTGGTGATGTTAGGAGCTCCAATCATAGAGAAGCATGTCAGACAATCCTTTCTTATCTTTTTGCCCATGGTCTTAATGACATTGGTGGGGGCCAGGCCATGCCTCCATTTTTGCTTCATGATACTTCTGAAAATGCTGCTATAAGAACTGTCAGCAAGAGTAAGGTATTAGAATTGCTTGAAATCATTCAGTTTAGATGTCCAGATTCCACTACTCAGCTCTCAAATATTGTGGCTGGTATGAAATATGACTTGCCGGCAGAAGACATACTTGGAAATCCGGGAAATTCCGGAAAGGGTGGTGTGTACTATTATTCCGAGAGAGGTGATCGGCTAATTGACCTTGCTTCTTTCCATGACAAACTTTGGCAGAAATATAATTCAGCATATGCCCAGGCAAGTAACCTTGGCAGTGAAGTTGAACTTAATAATGTTCGTGAGACAATTCAACAGTTGCTGAGATGGGGTTGGAAATACAATAAAAATCTTGAGGAACAAGCTGCACAACTTCATATGTTGACTGCTTGGTCTCAGATTGTTGAGGTGTCTGCTTCTAGAAGATTAACAATGCTTGAAGATCGATCTGAAATTCTTTTTCAGGTCCTTGATGTGTCTCTTAGTGCATCTGCTTCTCCTGACTGTTCATTGAGGATGGCATTCATACTATCACAGGTAGCATTGACATGCATGGCTAAGCTGCGAGATGAAAGATTTTTGTTCCCTGGCAGTCTGAGTTCTGATAACATCACATGCCTTGATCTCATTGTGGTGAAGCAATTATCAAATGGTGCTTGTCTGACCATATTGTTTAAGCTTATCATGGCAATTCTTAGAAATGAATCTTCAGAAGCTCTTAGGAGACGTCAATATGCTCTACTTCTTAGCTATTTCCAGTATTGCCAAAATGTGGTTGATCCTGATGTTCCAACCACCGTTCTTCAATTCTTGCTGCTCAGTGAACAAGATAATGAATATATTGATCTCCCAAAGATTGACAAAGAACAAGCAGAACTGGCTCGTGCAAACTTTTCAACTTTGAGGAAAGAAGCTCAGAGCATTTTGAATCTGGTCGTAAAAGATGCAACCCATGGTAGTGAACCTGGAAAGACAATATCACTTTATGTTCTTGATGCATTGATTAATATAGATCATGAGCGCTTTTTCTTGAGCCAACTTCAAAGCAGGGGTTTTTTAAGGTCTTGCTTTACAGCCATAAGCAATGTTTGCAATCAGGATGGTAGTCTTTCACTGGACTCATTGCAGAGGGCATGCACTTTTGAGGCTGAACTTGCTTTACTACTAAGAATCAGTCACAAGTATGGAAAATCCGGAGCACAGATTTTATTTTCCATGGGCATATTGGAGCATCTTGCATCTGGCAGAGCAATCAATTTACAGGGAAGTTTAAGGTGGGTTGAGACAAGACTTAGAAGAGATATGGCTGTGGATGTTGATAGACAACGGATGATTATTACTCCAGTCTTGAGATTAGTGTTTTCACTAACTTCCTTGGTTGATACATCTGACTTTTTGGAGGTTAAGAATAAAATTGTCCGTGAAGTAATCGATTTTATCAAAGGGCATCAATCACTGTTTGATCAAGTTCTCCGTTTAGACATTGCCGAGGCAGATGAACTAAGAACAGAGCAGGTCAATTTAGTTGTTGGTATTCTTAGCAAGGTTTGGCCATATGAAGAGAGCAATGAGTACGGTTTTGTTCAAGGGCTTTTTGGTCTGATGCATGCTCTTTTCTCACGTGATTCAAAGATTCCTAGTTTTGCTCAATCAAGAGTATCACCTGAGAATCAGAGGAATTCAGAACTACAGATGTTTAATTTGTGCTACAGCCTGAGCTCTTACTTGTATTTTCTAGTCACAAAGAAATCCCTGAGATTACAGCCTTCAGATGCCTCTTCCAGTTACGCTGCTTCTGTTGAACTTCAACAACCCACATTGAGCTTGCTTAATTCTCTTCTTTTTTCTGTCACAACTGCTTTTGAAAGGGCAGCTGAGGAGAAATCCTTGTTACTGAATAAGATTCGAGACATAAATGAACTGTCAAGGCAGGAAGTTGATGAAATCATCAATATGTGTGTCCGGCAAGACTCTGTTTCATCTTCAGATAACATACATAAAAGGAGGTACATTGCAATGGTAGAAATGTGTCGAGTTGTTGCTAGTAGGGATCAGCTAATCATTTTATTACTGCCACTCTCTGAACATGTGCTAAATATCATCCTTATCCATCTTCAAGAGAGCTCTGTTGCACTCGATTCTACCTTGAGTACAAAAACAATTGCATATGGTGCCAAATATGATGCACAACAGGACGTTGCTATGTTATATGGAAAGTTAGTTCCAACCCTTGAGCGACTTGAGTTGCTGAGTGAGGAGAAAGTAGGGCACAATCTCAAAGTATTCCGCAGATTAGCAACTTCTGCCAAAGATCTTGCAATTCAAAAATTGATTGTGTAG
>Glyma06g29565.1 sequence type=predicted peptide gene model=Glyma06g29565 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSPKQLLGTIESALLGTSPPMAAHRVELLHALRTSRTSLQSLLSYPPPKPSDRSQVQSKSVRLPDSPPISLDDQDVHIALKLSDDLHLNEVDCVRLLVSANKEWGLMGREPLEILRLAAGLWYTERRDLITSLHLLLRAVVLDQGLQDDILVDIQKYLEDLISSGLRQRLISLIKELNREEPSGLGGPQCESYVLDSRGSLVERQAVVSRERLILGHCLVLSILVVRTCPKDIKDIFSVLKDSASEVSESNATVKHQITFCLLFALVIAFVSDGLSTVPDKASVLSSNTSFRHEFHELVMTTGNDPHVEGFVGGIRLAWVVHLMLIQDGVPARETISSGSSNELGYLSQCLEAIFSNNVFQFLLDKVLRTASFQTEDEDMIYMYNAYLHKLITCFLSNPLARDKIKESKERIMSVLSPYRVVGSHDFAQDSNSSSLHGTEMGPLPFNSILDFVSEIYQKEPELLSGNDVLWTFVNFAGEDHTNFQTLVAFLNMLSTLACSQEGASKVYELLQGKAFRSIGWSTLFECLTIYDEKFKQSLQTAGAMLPEIQEGDAKALVAYLNILKKVVENGNPTERKTWFPDIEPLFKLLSYENVPPYLKGALRNAIATFIKVSPVLKDSIWTYLEQYDLPVVVGLDIPNSPQSMGTQVYDMQFELNEIEARREQYPSTISFLNLINALIAEERDLSDRGRRFIGIFRFIYDHVFGPFPQRAYADPCEKWQLVGACLKHFHMVLSMYDIKDEDYEGVVDQSRLSATKESSPLQTQLPVLELLKDFMSGKTAFRNIMSILLPGVNSVIAERSSQLYGQLLENAVQLSLEIIILVLDKDLLLSDYWRPLYQPLDIILSHDHNQIVALLEYVRYDFQPKVQQSSIKIMSILSSRMVGLVQLLLKSNASNSLIEDYAACLELRSEELQNLENNNDDPGILIMQLLIDNISRPAPNITHLLLKFDLDTPIERTVLQPKFYYSCMKVILDILEKLLKPGVNALLHEFGFQLLYELCVDPLTSGPTMDLLSNKKYLFFVKHLDTIGIAPLPKRNSNQSLRNSSLHQRAWLLKLLAVELHAGDVRSSNHREACQTILSYLFAHGLNDIGGGQAMPPFLLHDTSENAAIRTVSKSKVLELLEIIQFRCPDSTTQLSNIVAGMKYDLPAEDILGNPGNSGKGGVYYYSERGDRLIDLASFHDKLWQKYNSAYAQASNLGSEVELNNVRETIQQLLRWGWKYNKNLEEQAAQLHMLTAWSQIVEVSASRRLTMLEDRSEILFQVLDVSLSASASPDCSLRMAFILSQVALTCMAKLRDERFLFPGSLSSDNITCLDLIVVKQLSNGACLTILFKLIMAILRNESSEALRRRQYALLLSYFQYCQNVVDPDVPTTVLQFLLLSEQDNEYIDLPKIDKEQAELARANFSTLRKEAQSILNLVVKDATHGSEPGKTISLYVLDALINIDHERFFLSQLQSRGFLRSCFTAISNVCNQDGSLSLDSLQRACTFEAELALLLRISHKYGKSGAQILFSMGILEHLASGRAINLQGSLRWVETRLRRDMAVDVDRQRMIITPVLRLVFSLTSLVDTSDFLEVKNKIVREVIDFIKGHQSLFDQVLRLDIAEADELRTEQVNLVVGILSKVWPYEESNEYGFVQGLFGLMHALFSRDSKIPSFAQSRVSPENQRNSELQMFNLCYSLSSYLYFLVTKKSLRLQPSDASSSYAASVELQQPTLSLLNSLLFSVTTAFERAAEEKSLLLNKIRDINELSRQEVDEIINMCVRQDSVSSSDNIHKRRYIAMVEMCRVVASRDQLIILLLPLSEHVLNIILIHLQESSVALDSTLSTKTIAYGAKYDAQQDVAMLYGKLVPTLERLELLSEEKVGHNLKVFRRLATSAKDLAIQKLIV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
