Glyma06g29540 - SoyBase

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Report for Sequence Feature Glyma06g29540

Feature Type:	gene_model
Chromosome:	Gm06
Start:	27971582
stop:	27978664
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g29540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G47650	AT	Annotation by Michelle Graham. TAIR10: DnaJ/Hsp40 cysteine-rich domain superfamily protein \| chr3:17569576-17570262 FORWARD LENGTH=136	SoyBase	E_val: 4.00E-41	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0009657	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid organization	SoyBase	N/A	ISS
GO:0009773	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
UniRef100_D7LRE2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bundle-sheath defective protein 2 family n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LRE2_ARALL	SoyBase	E_val: 4.00E-39	ISS
UniRef100_I1KDF3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDF3_SOYBN	SoyBase	E_val: 3.00E-91	ISS

Expression Patterns of Glyma06g29540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g29540 not represented in the dataset	Glyma06g29540 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g29540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g222000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g29540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g29540

Limit To All Plant Sequences

>Glyma06g29540.1   sequence type=CDS   gene model=Glyma06g29540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACACCCTCTGAGTTTTGCTCCTATTTGTTCCTTCAAATCCTCGTCCACACCAGGGGCACTTACAGTTACCGGTAATTCAGTTGTTTCGGCTTTTATTAGGATAAACGAAGCATGTCACGATTCTAAAGCTCGAAACTTTCAATCTTTGAAGGTTAAGGCTGCGGATGATAATCCAAGCACCAAAACAAAGAGTATTGTTTGTTCTGATTGTGAGGGAAATGGTGCAATATTATGCACTCAATGCAAAGGTACTGGAGTTAATTCTGTAGATCACTTCAACGGACAATTTAAAGCTGGTGGATTATGTTGGCTATGCAGGGGAAAGAGGGACATATTGTGTGGAAGTTGTAATGGAGCTGGCTTTATTGGTGGATTCATGAGCACATTTGATGATTAG

Predicted protein sequences of Glyma06g29540

Limit To All Plant Sequences

>Glyma06g29540.1   sequence type=predicted peptide   gene model=Glyma06g29540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHPLSFAPICSFKSSSTPGALTVTGNSVVSAFIRINEACHDSKARNFQSLKVKAADDNPSTKTKSIVCSDCEGNGAILCTQCKGTGVNSVDHFNGQFKAGGLCWLCRGKRDILCGSCNGAGFIGGFMSTFDD*

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