Glyma06g28570 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g28570

Feature Type:	gene_model
Chromosome:	Gm06
Start:	27066857
stop:	27078308
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g28570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G30600	AT	Annotation by Michelle Graham. TAIR10: signal recognition particle receptor alpha subunit family protein \| chr4:14938142-14940600 REVERSE LENGTH=634	SoyBase	E_val: 0	ISS
GO:0006184	GO-bp	Annotation by Michelle Graham. GO Biological Process: GTP catabolic process	SoyBase	N/A	ISS
GO:0006605	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting	SoyBase	N/A	ISS
GO:0006614	GO-bp	Annotation by Michelle Graham. GO Biological Process: SRP-dependent cotranslational protein targeting to membrane	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005786	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle, endoplasmic reticulum targeting	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005047	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal recognition particle binding	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0781	KOG	Signal recognition particle receptor, alpha subunit	JGI		ISS
PTHR11564	Panther	GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS	JGI		ISS
PTHR11564:SF8	Panther	SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT (SR-ALPHA)	JGI		ISS
PF00448	PFAM	SRP54-type protein, GTPase domain	JGI		ISS
PF02881	PFAM	SRP54-type protein, helical bundle domain	JGI		ISS
PF04086	PFAM	Signal recognition particle, alpha subunit, N-terminal	JGI		ISS
UniRef100_B9STS5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Signal recognition particle receptor alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9STS5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KDE5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDE5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g28570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g28570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g220500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g28570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g28570

Limit To All Plant Sequences

>Glyma06g28570.2   sequence type=transcript   gene model=Glyma06g28570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGCATTCGCTAAGCGGCGCGCTTAGATCTGTACATGTAATCCATGTATAAATAAACCTTATAACAATTTTTCAAGAACTCCAATTTCATTTTCATTTTTTCTTTTTCTATTTTTAATTGTCTCTGATTTTCTCGTAGAACGCGTTTCTTGCCACTCCGAAAAACAAGAGGAAAAAATTGGAAGTTTTCAAGGATGTTAGAACAGTTACTGATATTTACAAGAGGAGGGTTAATCCTCTGGACTTGTAAGGAACTTGGGAACGCTCTGAAAGGTTCACCTATCGATACCTTGATCCGTTCCTGTCTTTTGGAGGAGCGATCTGGTGCGGCAGCATACAATTATGATGCCCCTGGTGCTTCCTACACCCTCAAGTGGACCTTCCACAATGATCTTGGTCTTGTTTTTGTGGCTGTTTACCAACGGATCCTTCACCTCTTATATGTGGAGGATCTGCTTGCTATGGTGAAGCGCGAGTTTTCGCAAGTTTATGATCCCAAAACGACTGCATACCCCGATTTCGATGAGACCTTTAGGCAGCTGAAGATGGAGGCCCTGGCTCGCACCGAGGATTTGAAGCGGTCGAATTCAAATCCTGTTGCCGGGAATGCGAAGAAGCAGGTGCAGGGGAATGATAAATCTGGATTTGAGGGAGGGAATAAGAAGAAGAAGAGTGGTGGTGGTGCGGATGGCGACGATGGCAAGCGGAAGTTGGAGAATGGACACTCCAATGGAAATTTTCTTGTTGCTAAAGATACTAACCTGAGTAGGGATGTGAATGGTAGACATAATGGAAGTCCCAATGTTGGGGCTTTTGATGTACATAAGCTTCAGAAGCTTAGGACCAAAGGTGGGAAGAAGACTGATACTGTTGTTGCCAAGGCCTCCAAGGCAGAGCCAAACAAAAAAGTCACGAAGAAAAATAGAGTTTGGGATGAAGCTGCAACTACAGAAACTAAACTGGACTTTACCGATCATTCCGGTGAGGATGGGGAGAGGAACATAGATTTTGTTGTGGCTGCTGATCAAGGTGAAAGTATGATGGATAAAGAAGAGATTGTTAGCAGTGAAAGTGAGCAGGAAGAGGAGGACGAGGATGAGGAGGATGCAGGGAAGAACAGAAAGCCTGATGCCAAAAGCAAGGGTTGGTTTTCATCCATGTTCCAGAGTATTGCAGGGAAGGCAAATTTAGAGAAGTCAGACTTAGAACCAGCTTTAAAAGCTCTAAAGGATAGGCTCATGACCAAGAATGTGGCTGAGGAGATAGCTGAGAAACTCTGTGAATCAGTGGCAGCAAGTCTTGAAGGAAAAAAGCTGGCTTCATTTACAAGGATATCTTCAACAGTGCATGCGGCTATGGAAGAAGCTCTTATTCGAATTTTAACTCCTAGACGCTCTATTGATATACTGAGAGATGTGCATGCTGCCAAGGAGCAAAGGAAACCATATGTTGTTGTATTTGTTGGTGTTAATGGTGTTGGAAAATCTACTAATCTAGCTAAGGTTGCTTACTGGCTTTTGCAGCACAAGGTCAGTGTTATGATGGCTGCTTGTGACACATTTCGATCAGGGGCTGTTGAGCAGCTGCGGACCCATGCTCGAAGACTTCAGATCCCTATATTTGAGAAGGGCTATGAGAAAGATCCTGCCGTTGTGGCAAAAGAAGCAATTCAAGAAGCTTCACGCAATGGTTCGGATGTGGTTCTCGTTGATACAGCTGGTCGTATGCAGGATAATGAACCACTTATGAGAGCACTGTCAAAACTCATCTACCTTAACAATCCAGATCTAGTCTTATTTGTTGGAGAAGCACTGGTTGGTAATGACGCTGTTGATCAGCTTTCAAAGTTCAATCAGGTTTGATTCTATATTTTGCTCAATATTGCCCCGCTATTGCTGTTTTCCTTATTTTATGAAATAAATTAGAATATACTGACTCTGTAAAGATATTTTATACTGCCAGTATCATCCAATTAATCATGGATTGTTATATAAACAACTAACGTACCCCATTGCCCAAAGGCTCTTCACTAAGCGAAGGTATATGGGAGGGTCATTGTATACAGCCTTATCATTGTATATGGGAGGGTCACCAAGGCACAACTTTATCGCTGGGCCAAGATTCACCCTCAATCATGGATTGTTGTATAATTGAAAACTATTGACTTTTGTAATAATTACGTTAAAAGTTTCATTTAAGATTATTATTTGTAATTGTTAACAGTGCAAACATCTTCACATTGACAATGTGTCAAATTTTTTTTTTTTTTATTTAACCTCAATTATTTCACATTCACTGCAGAAATTAGCTGACCTTGCAACATCACCTAATCCAAGATTGATTGATGGGATCTTGCTCACGAAATTTGACACCATAGATGATAAGGTGGGAGCTGCACTTTCAATGGTTTACATATCTGGAGCTCCTGTCATGTTTGTGGGCTGTGGACAGTCTTATACTGACCTCAAGAAGCTCAATGTCAAATCAATTGTGAAGACTCTCCTTAAATGAGGGCACAAAGTGGTTTATTTTCCCTTGCAATCCTGTTTACCTGTCATGTTTGTTTCTGTTGAATGATGAACTTGTTAATCCTCGTTGATCCCATTACTTGGTGAGGAAAAAAACTATGTGGCTTTGACTTTTGAGGCAATTTGGTTTGTTTAGTTTAAGGAACTTGTTATTTTTTTTAATCAGCAAATGTTAGCTTTTAGTTTTTGTTAGCAAGGAGATTCGAACTTACGGCATCTTTCTCCCTTCCCTTCTTCCTTTATTATTAAATTAACCGTATATCTCCGTTTAAGAAACTTGTATTCAGGATCATCCCTGCATCCACCATTTTGGGATGCTTCTTCATGACTGTAATATAAGGTGCAGGGAAAGACGTTTCCTGTATTACTCAAGATACTTTTTCCTCTCGCCCTCTCGGGATTTTCCATCATGAGAGTATGAAAAAAATAATTATGTTTTCAGTCATTTTA

Coding sequences of Glyma06g28570

Limit To All Plant Sequences

>Glyma06g28570.1   sequence type=CDS   gene model=Glyma06g28570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGAACAGTTACTGATATTTACAAGAGGAGGGTTAATCCTCTGGACTTGTAAGGAACTTGGGAACGCTCTGAAAGGTTCACCTATCGATACCTTGATCCGTTCCTGTCTTTTGGAGGAGCGATCTGGTGCGGCAGCATACAATTATGATGCCCCTGGTGCTTCCTACACCCTCAAGTGGACCTTCCACAATGATCTTGGTCTTGTTTTTGTGGCTGTTTACCAACGGATCCTTCACCTCTTATATGTGGAGGATCTGCTTGCTATGGTGAAGCGCGAGTTTTCGCAAGTTTATGATCCCAAAACGACTGCATACCCCGATTTCGATGAGACCTTTAGGCAGCTGAAGATGGAGGCCCTGGCTCGCACCGAGGATTTGAAGCGGTCGAATTCAAATCCTGTTGCCGGGAATGCGAAGAAGCAGGTGCAGGGGAATGATAAATCTGGATTTGAGGGAGGGAATAAGAAGAAGAAGAGTGGTGGTGGTGCGGATGGCGACGATGGCAAGCGGAAGTTGGAGAATGGACACTCCAATGGAAATTTTCTTGTTGCTAAAGATACTAACCTGAGTAGGGATGTGAATGGTAGACATAATGGAAGTCCCAATGTTGGGGCTTTTGATGTACATAAGCTTCAGAAGCTTAGGACCAAAGGTGGGAAGAAGACTGATACTGTTGTTGCCAAGGCCTCCAAGGCAGAGCCAAACAAAAAAGTCACGAAGAAAAATAGAGTTTGGGATGAAGCTGCAACTACAGAAACTAAACTGGACTTTACCGATCATTCCGGTGAGGATGGGGAGAGGAACATAGATTTTGTTGTGGCTGCTGATCAAGGTGAAAGTATGATGGATAAAGAAGAGATTGTTAGCAGTGAAAGTGAGCAGGAAGAGGAGGACGAGGATGAGGAGGATGCAGGGAAGAACAGAAAGCCTGATGCCAAAAGCAAGGGTTGGTTTTCATCCATGTTCCAGAGTATTGCAGGGAAGGCAAATTTAGAGAAGTCAGACTTAGAACCAGCTTTAAAAGCTCTAAAGGATAGGCTCATGACCAAGAATGTGGCTGAGGAGATAGCTGAGAAACTCTGTGAATCAGTGGCAGCAAGTCTTGAAGGAAAAAAGCTGGCTTCATTTACAAGGATATCTTCAACAGTGCATGCGGCTATGGAAGAAGCTCTTATTCGAATTTTAACTCCTAGACGCTCTATTGATATACTGAGAGATGTGCATGCTGCCAAGGAGCAAAGGAAACCATATGTTGTTGTATTTGTTGGTGTTAATGGTGTTGGAAAATCTACTAATCTAGCTAAGGTTGCTTACTGGCTTTTGCAGCACAAGGTCAGTGTTATGATGGCTGCTTGTGACACATTTCGATCAGGGGCTGTTGAGCAGCTGCGGACCCATGCTCGAAGACTTCAGATCCCTATATTTGAGAAGGGCTATGAGAAAGATCCTGCCGTTGTGGCAAAAGAAGCAATTCAAGAAGCTTCACGCAATGGTTCGGATGTGGTTCTCGTTGATACAGCTGGTCGTATGCAGGATAATGAACCACTTATGAGAGCACTGTCAAAACTCATCTACCTTAACAATCCAGATCTAGTCTTATTTGTTGGAGAAGCACTGGTTGGTAATGACGCTGTTGATCAGCTTTCAAAGTTCAATCAGAAATTAGCTGACCTTGCAACATCACCTAATCCAAGATTGATTGATGGGATCTTGCTCACGAAATTTGACACCATAGATGATAAGGTGGGAGCTGCACTTTCAATGGTTTACATATCTGGAGCTCCTGTCATGTTTGTGGGCTGTGGACAGTCTTATACTGACCTCAAGAAGCTCAATGTCAAATCAATTGTGAAGACTCTCCTTAAATGA

>Glyma06g28570.2   sequence type=CDS   gene model=Glyma06g28570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGAACAGTTACTGATATTTACAAGAGGAGGGTTAATCCTCTGGACTTGTAAGGAACTTGGGAACGCTCTGAAAGGTTCACCTATCGATACCTTGATCCGTTCCTGTCTTTTGGAGGAGCGATCTGGTGCGGCAGCATACAATTATGATGCCCCTGGTGCTTCCTACACCCTCAAGTGGACCTTCCACAATGATCTTGGTCTTGTTTTTGTGGCTGTTTACCAACGGATCCTTCACCTCTTATATGTGGAGGATCTGCTTGCTATGGTGAAGCGCGAGTTTTCGCAAGTTTATGATCCCAAAACGACTGCATACCCCGATTTCGATGAGACCTTTAGGCAGCTGAAGATGGAGGCCCTGGCTCGCACCGAGGATTTGAAGCGGTCGAATTCAAATCCTGTTGCCGGGAATGCGAAGAAGCAGGTGCAGGGGAATGATAAATCTGGATTTGAGGGAGGGAATAAGAAGAAGAAGAGTGGTGGTGGTGCGGATGGCGACGATGGCAAGCGGAAGTTGGAGAATGGACACTCCAATGGAAATTTTCTTGTTGCTAAAGATACTAACCTGAGTAGGGATGTGAATGGTAGACATAATGGAAGTCCCAATGTTGGGGCTTTTGATGTACATAAGCTTCAGAAGCTTAGGACCAAAGGTGGGAAGAAGACTGATACTGTTGTTGCCAAGGCCTCCAAGGCAGAGCCAAACAAAAAAGTCACGAAGAAAAATAGAGTTTGGGATGAAGCTGCAACTACAGAAACTAAACTGGACTTTACCGATCATTCCGGTGAGGATGGGGAGAGGAACATAGATTTTGTTGTGGCTGCTGATCAAGGTGAAAGTATGATGGATAAAGAAGAGATTGTTAGCAGTGAAAGTGAGCAGGAAGAGGAGGACGAGGATGAGGAGGATGCAGGGAAGAACAGAAAGCCTGATGCCAAAAGCAAGGGTTGGTTTTCATCCATGTTCCAGAGTATTGCAGGGAAGGCAAATTTAGAGAAGTCAGACTTAGAACCAGCTTTAAAAGCTCTAAAGGATAGGCTCATGACCAAGAATGTGGCTGAGGAGATAGCTGAGAAACTCTGTGAATCAGTGGCAGCAAGTCTTGAAGGAAAAAAGCTGGCTTCATTTACAAGGATATCTTCAACAGTGCATGCGGCTATGGAAGAAGCTCTTATTCGAATTTTAACTCCTAGACGCTCTATTGATATACTGAGAGATGTGCATGCTGCCAAGGAGCAAAGGAAACCATATGTTGTTGTATTTGTTGGTGTTAATGGTGTTGGAAAATCTACTAATCTAGCTAAGGTTGCTTACTGGCTTTTGCAGCACAAGGTCAGTGTTATGATGGCTGCTTGTGACACATTTCGATCAGGGGCTGTTGAGCAGCTGCGGACCCATGCTCGAAGACTTCAGATCCCTATATTTGAGAAGGGCTATGAGAAAGATCCTGCCGTTGTGGCAAAAGAAGCAATTCAAGAAGCTTCACGCAATGGTTCGGATGTGGTTCTCGTTGATACAGCTGGTCGTATGCAGGATAATGAACCACTTATGAGAGCACTGTCAAAACTCATCTACCTTAACAATCCAGATCTAGTCTTATTTGTTGGAGAAGCACTGGTTGGTAATGACGCTGTTGATCAGCTTTCAAAGTTCAATCAGGTTTGA

Predicted protein sequences of Glyma06g28570

Limit To All Plant Sequences

>Glyma06g28570.1   sequence type=predicted peptide   gene model=Glyma06g28570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAAAYNYDAPGASYTLKWTFHNDLGLVFVAVYQRILHLLYVEDLLAMVKREFSQVYDPKTTAYPDFDETFRQLKMEALARTEDLKRSNSNPVAGNAKKQVQGNDKSGFEGGNKKKKSGGGADGDDGKRKLENGHSNGNFLVAKDTNLSRDVNGRHNGSPNVGAFDVHKLQKLRTKGGKKTDTVVAKASKAEPNKKVTKKNRVWDEAATTETKLDFTDHSGEDGERNIDFVVAADQGESMMDKEEIVSSESEQEEEDEDEEDAGKNRKPDAKSKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHAAMEEALIRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLATSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK*

>Glyma06g28570.2   sequence type=predicted peptide   gene model=Glyma06g28570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAAAYNYDAPGASYTLKWTFHNDLGLVFVAVYQRILHLLYVEDLLAMVKREFSQVYDPKTTAYPDFDETFRQLKMEALARTEDLKRSNSNPVAGNAKKQVQGNDKSGFEGGNKKKKSGGGADGDDGKRKLENGHSNGNFLVAKDTNLSRDVNGRHNGSPNVGAFDVHKLQKLRTKGGKKTDTVVAKASKAEPNKKVTKKNRVWDEAATTETKLDFTDHSGEDGERNIDFVVAADQGESMMDKEEIVSSESEQEEEDEDEEDAGKNRKPDAKSKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHAAMEEALIRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQV*

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