|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT4G30600 | AT | Annotation by Michelle Graham. TAIR10: signal recognition particle receptor alpha subunit family protein | chr4:14938142-14940600 REVERSE LENGTH=634 | SoyBase | E_val: 0 | ISS |
GO:0006184 | GO-bp | Annotation by Michelle Graham. GO Biological Process: GTP catabolic process | SoyBase | N/A | ISS |
GO:0006605 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting | SoyBase | N/A | ISS |
GO:0006614 | GO-bp | Annotation by Michelle Graham. GO Biological Process: SRP-dependent cotranslational protein targeting to membrane | SoyBase | N/A | ISS |
GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
GO:0005786 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle, endoplasmic reticulum targeting | SoyBase | N/A | ISS |
GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
GO:0005047 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: signal recognition particle binding | SoyBase | N/A | ISS |
GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
KOG0781 | KOG | Signal recognition particle receptor, alpha subunit | JGI | ISS | |
PTHR11564 | Panther | GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS | JGI | ISS | |
PTHR11564:SF8 | Panther | SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT (SR-ALPHA) | JGI | ISS | |
PF00448 | PFAM | SRP54-type protein, GTPase domain | JGI | ISS | |
PF02881 | PFAM | SRP54-type protein, helical bundle domain | JGI | ISS | |
PF04086 | PFAM | Signal recognition particle, alpha subunit, N-terminal | JGI | ISS | |
UniRef100_B9STS5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Signal recognition particle receptor alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9STS5_RICCO | SoyBase | E_val: 0 | ISS |
UniRef100_I1KDE5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDE5_SOYBN | SoyBase | E_val: 0 | ISS |
Glyma06g28570 not represented in the dataset |
Glyma06g28570 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.06g220500 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g28570.2 sequence type=transcript gene model=Glyma06g28570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGGCATTCGCTAAGCGGCGCGCTTAGATCTGTACATGTAATCCATGTATAAATAAACCTTATAACAATTTTTCAAGAACTCCAATTTCATTTTCATTTTTTCTTTTTCTATTTTTAATTGTCTCTGATTTTCTCGTAGAACGCGTTTCTTGCCACTCCGAAAAACAAGAGGAAAAAATTGGAAGTTTTCAAGGATGTTAGAACAGTTACTGATATTTACAAGAGGAGGGTTAATCCTCTGGACTTGTAAGGAACTTGGGAACGCTCTGAAAGGTTCACCTATCGATACCTTGATCCGTTCCTGTCTTTTGGAGGAGCGATCTGGTGCGGCAGCATACAATTATGATGCCCCTGGTGCTTCCTACACCCTCAAGTGGACCTTCCACAATGATCTTGGTCTTGTTTTTGTGGCTGTTTACCAACGGATCCTTCACCTCTTATATGTGGAGGATCTGCTTGCTATGGTGAAGCGCGAGTTTTCGCAAGTTTATGATCCCAAAACGACTGCATACCCCGATTTCGATGAGACCTTTAGGCAGCTGAAGATGGAGGCCCTGGCTCGCACCGAGGATTTGAAGCGGTCGAATTCAAATCCTGTTGCCGGGAATGCGAAGAAGCAGGTGCAGGGGAATGATAAATCTGGATTTGAGGGAGGGAATAAGAAGAAGAAGAGTGGTGGTGGTGCGGATGGCGACGATGGCAAGCGGAAGTTGGAGAATGGACACTCCAATGGAAATTTTCTTGTTGCTAAAGATACTAACCTGAGTAGGGATGTGAATGGTAGACATAATGGAAGTCCCAATGTTGGGGCTTTTGATGTACATAAGCTTCAGAAGCTTAGGACCAAAGGTGGGAAGAAGACTGATACTGTTGTTGCCAAGGCCTCCAAGGCAGAGCCAAACAAAAAAGTCACGAAGAAAAATAGAGTTTGGGATGAAGCTGCAACTACAGAAACTAAACTGGACTTTACCGATCATTCCGGTGAGGATGGGGAGAGGAACATAGATTTTGTTGTGGCTGCTGATCAAGGTGAAAGTATGATGGATAAAGAAGAGATTGTTAGCAGTGAAAGTGAGCAGGAAGAGGAGGACGAGGATGAGGAGGATGCAGGGAAGAACAGAAAGCCTGATGCCAAAAGCAAGGGTTGGTTTTCATCCATGTTCCAGAGTATTGCAGGGAAGGCAAATTTAGAGAAGTCAGACTTAGAACCAGCTTTAAAAGCTCTAAAGGATAGGCTCATGACCAAGAATGTGGCTGAGGAGATAGCTGAGAAACTCTGTGAATCAGTGGCAGCAAGTCTTGAAGGAAAAAAGCTGGCTTCATTTACAAGGATATCTTCAACAGTGCATGCGGCTATGGAAGAAGCTCTTATTCGAATTTTAACTCCTAGACGCTCTATTGATATACTGAGAGATGTGCATGCTGCCAAGGAGCAAAGGAAACCATATGTTGTTGTATTTGTTGGTGTTAATGGTGTTGGAAAATCTACTAATCTAGCTAAGGTTGCTTACTGGCTTTTGCAGCACAAGGTCAGTGTTATGATGGCTGCTTGTGACACATTTCGATCAGGGGCTGTTGAGCAGCTGCGGACCCATGCTCGAAGACTTCAGATCCCTATATTTGAGAAGGGCTATGAGAAAGATCCTGCCGTTGTGGCAAAAGAAGCAATTCAAGAAGCTTCACGCAATGGTTCGGATGTGGTTCTCGTTGATACAGCTGGTCGTATGCAGGATAATGAACCACTTATGAGAGCACTGTCAAAACTCATCTACCTTAACAATCCAGATCTAGTCTTATTTGTTGGAGAAGCACTGGTTGGTAATGACGCTGTTGATCAGCTTTCAAAGTTCAATCAGGTTTGATTCTATATTTTGCTCAATATTGCCCCGCTATTGCTGTTTTCCTTATTTTATGAAATAAATTAGAATATACTGACTCTGTAAAGATATTTTATACTGCCAGTATCATCCAATTAATCATGGATTGTTATATAAACAACTAACGTACCCCATTGCCCAAAGGCTCTTCACTAAGCGAAGGTATATGGGAGGGTCATTGTATACAGCCTTATCATTGTATATGGGAGGGTCACCAAGGCACAACTTTATCGCTGGGCCAAGATTCACCCTCAATCATGGATTGTTGTATAATTGAAAACTATTGACTTTTGTAATAATTACGTTAAAAGTTTCATTTAAGATTATTATTTGTAATTGTTAACAGTGCAAACATCTTCACATTGACAATGTGTCAAATTTTTTTTTTTTTTATTTAACCTCAATTATTTCACATTCACTGCAGAAATTAGCTGACCTTGCAACATCACCTAATCCAAGATTGATTGATGGGATCTTGCTCACGAAATTTGACACCATAGATGATAAGGTGGGAGCTGCACTTTCAATGGTTTACATATCTGGAGCTCCTGTCATGTTTGTGGGCTGTGGACAGTCTTATACTGACCTCAAGAAGCTCAATGTCAAATCAATTGTGAAGACTCTCCTTAAATGAGGGCACAAAGTGGTTTATTTTCCCTTGCAATCCTGTTTACCTGTCATGTTTGTTTCTGTTGAATGATGAACTTGTTAATCCTCGTTGATCCCATTACTTGGTGAGGAAAAAAACTATGTGGCTTTGACTTTTGAGGCAATTTGGTTTGTTTAGTTTAAGGAACTTGTTATTTTTTTTAATCAGCAAATGTTAGCTTTTAGTTTTTGTTAGCAAGGAGATTCGAACTTACGGCATCTTTCTCCCTTCCCTTCTTCCTTTATTATTAAATTAACCGTATATCTCCGTTTAAGAAACTTGTATTCAGGATCATCCCTGCATCCACCATTTTGGGATGCTTCTTCATGACTGTAATATAAGGTGCAGGGAAAGACGTTTCCTGTATTACTCAAGATACTTTTTCCTCTCGCCCTCTCGGGATTTTCCATCATGAGAGTATGAAAAAAATAATTATGTTTTCAGTCATTTTA
>Glyma06g28570.1 sequence type=CDS gene model=Glyma06g28570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAGAACAGTTACTGATATTTACAAGAGGAGGGTTAATCCTCTGGACTTGTAAGGAACTTGGGAACGCTCTGAAAGGTTCACCTATCGATACCTTGATCCGTTCCTGTCTTTTGGAGGAGCGATCTGGTGCGGCAGCATACAATTATGATGCCCCTGGTGCTTCCTACACCCTCAAGTGGACCTTCCACAATGATCTTGGTCTTGTTTTTGTGGCTGTTTACCAACGGATCCTTCACCTCTTATATGTGGAGGATCTGCTTGCTATGGTGAAGCGCGAGTTTTCGCAAGTTTATGATCCCAAAACGACTGCATACCCCGATTTCGATGAGACCTTTAGGCAGCTGAAGATGGAGGCCCTGGCTCGCACCGAGGATTTGAAGCGGTCGAATTCAAATCCTGTTGCCGGGAATGCGAAGAAGCAGGTGCAGGGGAATGATAAATCTGGATTTGAGGGAGGGAATAAGAAGAAGAAGAGTGGTGGTGGTGCGGATGGCGACGATGGCAAGCGGAAGTTGGAGAATGGACACTCCAATGGAAATTTTCTTGTTGCTAAAGATACTAACCTGAGTAGGGATGTGAATGGTAGACATAATGGAAGTCCCAATGTTGGGGCTTTTGATGTACATAAGCTTCAGAAGCTTAGGACCAAAGGTGGGAAGAAGACTGATACTGTTGTTGCCAAGGCCTCCAAGGCAGAGCCAAACAAAAAAGTCACGAAGAAAAATAGAGTTTGGGATGAAGCTGCAACTACAGAAACTAAACTGGACTTTACCGATCATTCCGGTGAGGATGGGGAGAGGAACATAGATTTTGTTGTGGCTGCTGATCAAGGTGAAAGTATGATGGATAAAGAAGAGATTGTTAGCAGTGAAAGTGAGCAGGAAGAGGAGGACGAGGATGAGGAGGATGCAGGGAAGAACAGAAAGCCTGATGCCAAAAGCAAGGGTTGGTTTTCATCCATGTTCCAGAGTATTGCAGGGAAGGCAAATTTAGAGAAGTCAGACTTAGAACCAGCTTTAAAAGCTCTAAAGGATAGGCTCATGACCAAGAATGTGGCTGAGGAGATAGCTGAGAAACTCTGTGAATCAGTGGCAGCAAGTCTTGAAGGAAAAAAGCTGGCTTCATTTACAAGGATATCTTCAACAGTGCATGCGGCTATGGAAGAAGCTCTTATTCGAATTTTAACTCCTAGACGCTCTATTGATATACTGAGAGATGTGCATGCTGCCAAGGAGCAAAGGAAACCATATGTTGTTGTATTTGTTGGTGTTAATGGTGTTGGAAAATCTACTAATCTAGCTAAGGTTGCTTACTGGCTTTTGCAGCACAAGGTCAGTGTTATGATGGCTGCTTGTGACACATTTCGATCAGGGGCTGTTGAGCAGCTGCGGACCCATGCTCGAAGACTTCAGATCCCTATATTTGAGAAGGGCTATGAGAAAGATCCTGCCGTTGTGGCAAAAGAAGCAATTCAAGAAGCTTCACGCAATGGTTCGGATGTGGTTCTCGTTGATACAGCTGGTCGTATGCAGGATAATGAACCACTTATGAGAGCACTGTCAAAACTCATCTACCTTAACAATCCAGATCTAGTCTTATTTGTTGGAGAAGCACTGGTTGGTAATGACGCTGTTGATCAGCTTTCAAAGTTCAATCAGAAATTAGCTGACCTTGCAACATCACCTAATCCAAGATTGATTGATGGGATCTTGCTCACGAAATTTGACACCATAGATGATAAGGTGGGAGCTGCACTTTCAATGGTTTACATATCTGGAGCTCCTGTCATGTTTGTGGGCTGTGGACAGTCTTATACTGACCTCAAGAAGCTCAATGTCAAATCAATTGTGAAGACTCTCCTTAAATGA >Glyma06g28570.2 sequence type=CDS gene model=Glyma06g28570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAGAACAGTTACTGATATTTACAAGAGGAGGGTTAATCCTCTGGACTTGTAAGGAACTTGGGAACGCTCTGAAAGGTTCACCTATCGATACCTTGATCCGTTCCTGTCTTTTGGAGGAGCGATCTGGTGCGGCAGCATACAATTATGATGCCCCTGGTGCTTCCTACACCCTCAAGTGGACCTTCCACAATGATCTTGGTCTTGTTTTTGTGGCTGTTTACCAACGGATCCTTCACCTCTTATATGTGGAGGATCTGCTTGCTATGGTGAAGCGCGAGTTTTCGCAAGTTTATGATCCCAAAACGACTGCATACCCCGATTTCGATGAGACCTTTAGGCAGCTGAAGATGGAGGCCCTGGCTCGCACCGAGGATTTGAAGCGGTCGAATTCAAATCCTGTTGCCGGGAATGCGAAGAAGCAGGTGCAGGGGAATGATAAATCTGGATTTGAGGGAGGGAATAAGAAGAAGAAGAGTGGTGGTGGTGCGGATGGCGACGATGGCAAGCGGAAGTTGGAGAATGGACACTCCAATGGAAATTTTCTTGTTGCTAAAGATACTAACCTGAGTAGGGATGTGAATGGTAGACATAATGGAAGTCCCAATGTTGGGGCTTTTGATGTACATAAGCTTCAGAAGCTTAGGACCAAAGGTGGGAAGAAGACTGATACTGTTGTTGCCAAGGCCTCCAAGGCAGAGCCAAACAAAAAAGTCACGAAGAAAAATAGAGTTTGGGATGAAGCTGCAACTACAGAAACTAAACTGGACTTTACCGATCATTCCGGTGAGGATGGGGAGAGGAACATAGATTTTGTTGTGGCTGCTGATCAAGGTGAAAGTATGATGGATAAAGAAGAGATTGTTAGCAGTGAAAGTGAGCAGGAAGAGGAGGACGAGGATGAGGAGGATGCAGGGAAGAACAGAAAGCCTGATGCCAAAAGCAAGGGTTGGTTTTCATCCATGTTCCAGAGTATTGCAGGGAAGGCAAATTTAGAGAAGTCAGACTTAGAACCAGCTTTAAAAGCTCTAAAGGATAGGCTCATGACCAAGAATGTGGCTGAGGAGATAGCTGAGAAACTCTGTGAATCAGTGGCAGCAAGTCTTGAAGGAAAAAAGCTGGCTTCATTTACAAGGATATCTTCAACAGTGCATGCGGCTATGGAAGAAGCTCTTATTCGAATTTTAACTCCTAGACGCTCTATTGATATACTGAGAGATGTGCATGCTGCCAAGGAGCAAAGGAAACCATATGTTGTTGTATTTGTTGGTGTTAATGGTGTTGGAAAATCTACTAATCTAGCTAAGGTTGCTTACTGGCTTTTGCAGCACAAGGTCAGTGTTATGATGGCTGCTTGTGACACATTTCGATCAGGGGCTGTTGAGCAGCTGCGGACCCATGCTCGAAGACTTCAGATCCCTATATTTGAGAAGGGCTATGAGAAAGATCCTGCCGTTGTGGCAAAAGAAGCAATTCAAGAAGCTTCACGCAATGGTTCGGATGTGGTTCTCGTTGATACAGCTGGTCGTATGCAGGATAATGAACCACTTATGAGAGCACTGTCAAAACTCATCTACCTTAACAATCCAGATCTAGTCTTATTTGTTGGAGAAGCACTGGTTGGTAATGACGCTGTTGATCAGCTTTCAAAGTTCAATCAGGTTTGA
>Glyma06g28570.1 sequence type=predicted peptide gene model=Glyma06g28570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAAAYNYDAPGASYTLKWTFHNDLGLVFVAVYQRILHLLYVEDLLAMVKREFSQVYDPKTTAYPDFDETFRQLKMEALARTEDLKRSNSNPVAGNAKKQVQGNDKSGFEGGNKKKKSGGGADGDDGKRKLENGHSNGNFLVAKDTNLSRDVNGRHNGSPNVGAFDVHKLQKLRTKGGKKTDTVVAKASKAEPNKKVTKKNRVWDEAATTETKLDFTDHSGEDGERNIDFVVAADQGESMMDKEEIVSSESEQEEEDEDEEDAGKNRKPDAKSKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHAAMEEALIRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLATSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK* >Glyma06g28570.2 sequence type=predicted peptide gene model=Glyma06g28570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAAAYNYDAPGASYTLKWTFHNDLGLVFVAVYQRILHLLYVEDLLAMVKREFSQVYDPKTTAYPDFDETFRQLKMEALARTEDLKRSNSNPVAGNAKKQVQGNDKSGFEGGNKKKKSGGGADGDDGKRKLENGHSNGNFLVAKDTNLSRDVNGRHNGSPNVGAFDVHKLQKLRTKGGKKTDTVVAKASKAEPNKKVTKKNRVWDEAATTETKLDFTDHSGEDGERNIDFVVAADQGESMMDKEEIVSSESEQEEEDEDEEDAGKNRKPDAKSKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHAAMEEALIRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQV*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||