SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G57930 | AT | Annotation by Michelle Graham. TAIR10: Arabidopsis thaliana protein of unknown function (DUF794) | chr5:23454690-23456354 FORWARD LENGTH=443 | SoyBase | E_val: 2.00E-108 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0009073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process | SoyBase | N/A | ISS |
| GO:0009637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to blue light | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of proton transport | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0016556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA modification | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR10388 | Panther | TRANSLATION FACTOR SUI1 | JGI | ISS | |
| PTHR10388:SF3 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF05634 | PFAM | Arabidopsis thaliana protein of unknown function (DUF794) | JGI | ISS | |
| UniRef100_G7ITZ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: APO protein n=1 Tax=Medicago truncatula RepID=G7ITZ8_MEDTR | SoyBase | E_val: 1.00E-140 | ISS |
| UniRef100_I1KDE4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDE4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g28560 not represented in the dataset |
Glyma06g28560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g220400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g28560.1 sequence type=CDS gene model=Glyma06g28560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAACGTGGTTTGCTTTGTCCAGTATATTTCCCAAACTGTTCTCTGTTCAATTGCTAACCCATGGTAACAGTAGGATTAGAGTTCCTGTGACTATTAGAATTCAACCAGAGAGGTTTTGTCATCGTGCGCCAACCGTCACGAATGAAGTGCCGCAAAATGCTGATTTTCCTCAGCACTATTCGAGAAAAGAGAAGAAACCTTTTCCAGTGCCCATTGTAGAACTGCGACGAGCAGCTAGGGAGAGGATGAAGAAGATGAAAGATGAGCCGAGAAAATCAATGTCAGCACCTAAGAATGGGTTGCTGGTGAAGAGCCTTGTATTGACTGCGTATAATGTGTATAACACTAGGATCACTTTGATCAACAATCTGAAGAAGCTGCTCAAAGTAGTGCCTGTGCATGCTTGTGGGTGGTGCAATGAAATCCATGTAGGACCTGTTGGACATCCATTCGAGTTATGTAAAGGCACACATGCCAACATCCGCAAGGGCCTCCACGAATGGACGAATGCACATGTTGAAGACATATTAATTCCAATTGAAGCATATCACCTCTTTGATCGTCTTGGAAAGTGGATTACTCATGAAGAGAGATTTTCTGGTGTTGAAATTCCAGAGTTTCCCACCAAAAGGAGAAGAAAGCCTATCATCCGTATTGGGAGGAAGGAATTCATCGATGCTGATGAAAGTGACTTACCAGATAAAATCTCAGAGGGCCCTTTAAAACCGTTACCAGCTGAAACACCTGATTCAGAAATAGTAGCTCCATTAGACAATGAAGTAGTCCCTCTTGCTGTGGAAACTATCCTAGCATGGGAACGGACGAGGAAAGGTGCGAAGAGACTAATGAGGCTGTACAATGTGAGTGTTTGTGGATATTGCCCTGAAATTCATGTCGGTTCCCAGGATCACAAAGCTTAA
>Glyma06g28560.1 sequence type=predicted peptide gene model=Glyma06g28560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATWFALSSIFPKLFSVQLLTHGNSRIRVPVTIRIQPERFCHRAPTVTNEVPQNADFPQHYSRKEKKPFPVPIVELRRAARERMKKMKDEPRKSMSAPKNGLLVKSLVLTAYNVYNTRITLINNLKKLLKVVPVHACGWCNEIHVGPVGHPFELCKGTHANIRKGLHEWTNAHVEDILIPIEAYHLFDRLGKWITHEERFSGVEIPEFPTKRRRKPIIRIGRKEFIDADESDLPDKISEGPLKPLPAETPDSEIVAPLDNEVVPLAVETILAWERTRKGAKRLMRLYNVSVCGYCPEIHVGSQDHKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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