SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G30580 | AT | Annotation by Michelle Graham. TAIR10: Phospholipid/glycerol acyltransferase family protein | chr4:14932515-14934489 REVERSE LENGTH=356 | SoyBase | E_val: 3.00E-131 | ISS |
| GO:0006636 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0006655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0008654 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phospholipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003841 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 1-acylglycerol-3-phosphate O-acyltransferase activity | SoyBase | N/A | ISS |
| GO:0016746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups | SoyBase | N/A | ISS |
| KOG2848 | KOG | 1-acyl-sn-glycerol-3-phosphate acyltransferase | JGI | ISS | |
| PTHR10434 | Panther | 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE | JGI | ISS | |
| PF01553 | PFAM | Acyltransferase | JGI | ISS | |
| UniRef100_G7JXV9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Medicago truncatula RepID=G7JXV9_MEDTR | SoyBase | E_val: 9.00E-157 | ISS |
| UniRef100_I1LT85 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LT85_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g28331 not represented in the dataset |
Glyma06g28331 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g220300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g28331.1 sequence type=CDS gene model=Glyma06g28331 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGTTACTCCTCTCTCTTCCCCTTCTCCAATCCATCGTCTCCATCTCCGTCACAAAGAAGCGAGATTCTTGGCGGTGCCTTCTACCCTCTTGTGTACTCGTAGAGGAACAACAACTTATGTACACCCAATTTTGAGGACTTCACATAACTCTCCTCCATGTAGCTTGCAAGCAATCTCCAAGAAGCATGAAAATGTGTCGTGGTTATCTGTTAGTCCTAAATTGCATGTTCAGAATAAATTCCCGAGAGATGTAGTTGTAAGATCTGAACTTACTGCTGCTGGGTCTGCTGGAGATGGCTATTTGCTACCTGAGCTGAAATTGGAATCTAAAGTCAGGGGAGTTTGTTTTTATGTTGTCACTGCCTTTTCTGCCATATTTCTTTTTATGCTGATGCTGGTTGGGCATCCATCAGTGCTCCTGTTTGATCGCTACAGAAGAATGTTCCATCATTTTGTTGCCAAAGTATGGGCTGCACTGACTGTAGCGCCATTTTACAAAATTGAATTTGAGGGATTGGAGAATCTGCCACCTCCAGATACTCCTGCTGTGTATGTTTCGAATCATCAGAGTTTTCTAGACATATATACTCTTCTTACTTTAGGAAGAAGCTTTAAGTTCATAAGCAAGACTGGGATATTCCTCTTTCCAATAATTGGGTGGGCAATGTTTCTTTTGGGTGTCATCCCTTTGAAGCGCATGGACAGCCGAAGCCAGCTGGACTGTCTTAAACGATGCATGGATCTTATCAAGAAAGGAGCCTCTGTTTTTTTCTTTCCAGAGGGAACACGCAGTAAAGATGGAAAGCTAGGCACATTCAAGAAGGGTGCTTTCAGTGTTGCTGCAAAGACAAATGCACCAGTTGTACCAATTTCCCTTATTGGAACTGGTCAAATCATGCCTGCAGGAAAGGAGGGTATAGTGAACCTAGGTTCTGTGAAAGTGGTTATTCATAAACCTATTGTTGGAAAGGATCCTGATATGTTATGCAAAGAAGCTAGGAAGACAATAGCAAGTGTGCTGACTCAGAGCTGA
>Glyma06g28331.1 sequence type=predicted peptide gene model=Glyma06g28331 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEVTPLSSPSPIHRLHLRHKEARFLAVPSTLLCTRRGTTTYVHPILRTSHNSPPCSLQAISKKHENVSWLSVSPKLHVQNKFPRDVVVRSELTAAGSAGDGYLLPELKLESKVRGVCFYVVTAFSAIFLFMLMLVGHPSVLLFDRYRRMFHHFVAKVWAALTVAPFYKIEFEGLENLPPPDTPAVYVSNHQSFLDIYTLLTLGRSFKFISKTGIFLFPIIGWAMFLLGVIPLKRMDSRSQLDCLKRCMDLIKKGASVFFFPEGTRSKDGKLGTFKKGAFSVAAKTNAPVVPISLIGTGQIMPAGKEGIVNLGSVKVVIHKPIVGKDPDMLCKEARKTIASVLTQS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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