Glyma06g28090 - SoyBase

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Report for Sequence Feature Glyma06g28090

Feature Type:	gene_model
Chromosome:	Gm06
Start:	26450308
stop:	26454044
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g28090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G24170	AT	Annotation by Michelle Graham. TAIR10: Endomembrane protein 70 protein family \| chr2:10274307-10276894 REVERSE LENGTH=637	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
KOG1278	KOG	Endosomal membrane proteins, EMP70	JGI		ISS
PTHR10766	Panther	TRANSMEMBRANE 9 SUPERFAMILY PROTEIN MEMBER	JGI		ISS
PF02990	PFAM	Endomembrane protein 70	JGI		ISS
UniRef100_B9STR3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Endosomal P24A protein, putative n=1 Tax=Ricinus communis RepID=B9STR3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KDE2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDE2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g28090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g28090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g218900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g28090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g28090

Limit To All Plant Sequences

>Glyma06g28090.1   sequence type=CDS   gene model=Glyma06g28090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGAGTTCTTCTCGCACGTAATAACCTGTGTCTGTGGATCCATGTGTATTTTTTGTTACTTGTTCATCTCCATGTTGGAACTAGTTTTTACCTTCCTGGTGTTGCACCGGAGGATTTCCACAAGGGGGATCTGTTGAGGGTGAAAGTGAACAAACTATCTTCCACAAAAACACAGCTTCCTTACTCCTACTATTCACTGCCTTACTGTCATCCAGGTCACATTGTTGACAGTGCTGAGAATCTTGGGGAAGTCCTGAGGGGTGACCGCATAGAAAACTCTCCTTACGTGTTTAAAATGAGAGAACCCCAGATGTGCAATGTTGTTTGTCGGCTAACTCTCAATGCAAAAACAGCCAAAGAGTTCAAGGAAAAGATAGATGATGAATATCGTGTGAACATGATTTTAGACAATCTTCCTTTGGTTGTTCCACTACGGCGACCAGATCGTGAGTCATCCTTGGTGTATCTGCATGGCTTCCTAGTTGGTCTTAAAGGACAGTATGCAGGAAACAAGGATGAAAAGCATTTTGTCCACAACCACTTAACATTTATAGTTAAGTATCACAGAGATCCCGTGACAGAAATGTCAAGAATTGTAGGATTTGAGGTTAAGCCTTTCAGTGTCAAGCATGAATATGATGGTGGATGGGATAATACCACACGCTTAACTACATGTGATCCTCATGCAAAAAAGTTAGTCTCAGGCTCTGAGCCTCCTCAAGAGGTTGAAGACAAGAAGGAGATAATTTTTACCTATGATGTTGAGTTCCAGGAGAGTAATGTGAAGTGGGCATCTCGCTGGGATTCCTATCTCCTAATGGCTGATGACCAAATTCACTGGTTTTCAATTATTAATTCTTTATTGATTGTACTTTTTCTATCGGGCATGGTGGCTATGATAATGTTGAGGACACTTTACCGTGATATTTCCAAGTACAATCAATTAGAGACTCAGGAGGAAGCTCAGGAAGAGTCAGGGTGGAAACTTGTCCATGGAGATGTTTTCAGGCCTCCTTCAAACTCGGATTTACTCTGTGTATATGTTGGAACTGGTGTTCAGTTTTTTGGGATGATTCTTGTCACCATGATTTTTGCTGCACTTGGATTCCTCTCCCCCTCAAATAGAGGGGGGTTGATGACTGCCATGCTCTTGCTCTGGGTCCTTATGGGACTGTATGGTGGCTACTCTTCGGCACGTCTTTATAAGATGTTAAAGGGAACAGAATGGAAAAGAATTGCTCTCAAGACAGCCTTTATGTTTCCTGCCACTGCCTTTGCAATTTTCTTTGTGTTAAATGCACTAATCTGGGGCCAGAGGTCTTCTGGGGCTGTGCCATTTGGTACAATGTTTGCTCTTGTTTTCTTATGGTTTTGCATCTCAGTTCCACTTGTGTTTCTTGGTGGTCATTTTGGTTATAAAAAGCCAGTGACTGAGGATCCTGTAAAGACCAACAAGATAGCCAGGCAGATCCCAGAGCAGCCTTGGTACATGAACTCACTCTTCTCTATTCTAATAGGAGGCATACTCCCATTTGGTGCTGTCTTCATTGAGCTTTTCTTCATTCTCACATCTATCTGGTTGCATCAATTTTATTATATATTTGGTTTCCTCTTCATTGTGTTCCTCATCCTCATTGTTACTTGTGCTGAGATCACAATAGTTCTCTGCTACTTCCAGTTGTGTAGCGAGGACTACCGTTGGTGGTGGAGGTCTTATCTCACTTCAGGTTCCTCTGCACTCTACCTTTTCCTCTATGCTGCATTTTACTTCTTCACAAAGCTTGAGATCACAAAACCAGTTTCTGGAGTCTTGTATTTTGGGTACATGCTGCTTCTTTCATATGGTTTCTTTGTGGTCACTGGTACCATTGGTTTCTATTCATGCTTCTGGTTCATAAAGCTAATCTACGCGTCAGTGAAAATTGACTGA

Predicted protein sequences of Glyma06g28090

Limit To All Plant Sequences

>Glyma06g28090.1   sequence type=predicted peptide   gene model=Glyma06g28090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARVLLARNNLCLWIHVYFLLLVHLHVGTSFYLPGVAPEDFHKGDLLRVKVNKLSSTKTQLPYSYYSLPYCHPGHIVDSAENLGEVLRGDRIENSPYVFKMREPQMCNVVCRLTLNAKTAKEFKEKIDDEYRVNMILDNLPLVVPLRRPDRESSLVYLHGFLVGLKGQYAGNKDEKHFVHNHLTFIVKYHRDPVTEMSRIVGFEVKPFSVKHEYDGGWDNTTRLTTCDPHAKKLVSGSEPPQEVEDKKEIIFTYDVEFQESNVKWASRWDSYLLMADDQIHWFSIINSLLIVLFLSGMVAMIMLRTLYRDISKYNQLETQEEAQEESGWKLVHGDVFRPPSNSDLLCVYVGTGVQFFGMILVTMIFAALGFLSPSNRGGLMTAMLLLWVLMGLYGGYSSARLYKMLKGTEWKRIALKTAFMFPATAFAIFFVLNALIWGQRSSGAVPFGTMFALVFLWFCISVPLVFLGGHFGYKKPVTEDPVKTNKIARQIPEQPWYMNSLFSILIGGILPFGAVFIELFFILTSIWLHQFYYIFGFLFIVFLILIVTCAEITIVLCYFQLCSEDYRWWWRSYLTSGSSALYLFLYAAFYFFTKLEITKPVSGVLYFGYMLLLSYGFFVVTGTIGFYSCFWFIKLIYASVKID*

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