Glyma06g27880 - SoyBase

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Report for Sequence Feature Glyma06g27880

Feature Type:	gene_model
Chromosome:	Gm06
Start:	25965276
stop:	25969791
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g27880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G57950	AT	Annotation by Michelle Graham. TAIR10: 26S proteasome regulatory subunit, putative \| chr5:23460765-23462128 FORWARD LENGTH=227	SoyBase	E_val: 1.00E-100	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0005838	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle	SoyBase	N/A	ISS
KOG3129	KOG	26S proteasome regulatory complex, subunit PSMD9	JGI		ISS
PTHR12651	Panther	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 9	JGI		ISS
UniRef100_I1KDE1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDE1_SOYBN	SoyBase	E_val: 3.00E-164	ISS
UniRef100_Q8LAJ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome non-ATPase regulatory subunit 9 n=1 Tax=Arabidopsis thaliana RepID=Q8LAJ4_ARATH	SoyBase	E_val: 6.00E-98	ISS

Expression Patterns of Glyma06g27880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g27880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g219200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g27880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g27880

Limit To All Plant Sequences

>Glyma06g27880.2   sequence type=transcript   gene model=Glyma06g27880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAATTTTCATCTATATGATATCACATGACATTCTCAGAATTTTAGTATTAAAAAAAAAAAAAATAGAGTAGTAGAATAGTCGATTAGGTCTACGGAAAAGCTGTGCGCCACCATTCCATTCCATTCCAGCATAATACAGTGTGTACAGAATAAATCAGTAAAATACAACATACAGTATATCAGAGTCAGAATTGAGAACAATCGTTGGTGTGGAACGTGACAATGGTGGCGACGAACGTGAAGGCAGAAACCATGTCTCTGATGGACAAGCGCAGCGCCTTGGAGGCTGAGATGAACTCCATCATCGCCCGCCTCTCCCAGCCCGGCGCTCCTGGCCTCTCCGGAAATCTCGTCGACTCTGAGGGTTTTCCCCGTTCCGATATCGACATCCCCGTTGTTCGAGCCGAACGACGTCGCCTGGCAGAGCTGCGCAGTGACCACAACGAAGTAACTGAGAAAATTAACCTAAATATTCAGATTCTCCATTCGGCAAGACTCGGAAATAGGTCATTGCCCTTCAAGAATTCAGATACTCAGATCTCATCAAATATGGACACTGTTGCATCAACACCATCACAAAATGTCCTTCTGATACGATCTCCCAACTCAATGGATGTGAACGTGTTGATTAGTAGACCATTTGCAATGGTAGATGAGATAGCAGATGCATCACCAGCAGTAGAGGATGGTTTACAACTTGGGGATCAAATTTTGAAATTTGGCAATGTTGAAGCAGGTGATAATTTGCTCCAAAGGCTTTCTTCTGAGGCTCAGTCAAATCTGGGTTGTGCAGTACCAGTTGTTATTATGAGGCAAGGCACAGTGATCAACTTAACTATTACACCTAGACCTTGGCAAGGCAGAGGACTATTGGGATGCCATTTTCGGATCTTGTAGGTGCCATGAACTTATTTTTCACATGATGGTGGTCACGGTTTTTCCTTTTGATGCATTTCCCACCCTGAGTTCTTTACCTTATGATATTCATCTTGGCAAGACTCCATATATGTAATAAATAATTACATTACAGCCGACCTTTGATTGTGGTGCACTTTCTTTGACTCAATAACGTGTTACTCTTTTTATGATCATTTTTCTTTTAAAACGCAAAGTAATTTTAGATATCATAATGGTAAATTTATGTCAAGATTCCTTGCATATGAACTGCATTCATAAGCTTATGTAGCTTTCTCGAGACAGAAAATGATGAGC

Coding sequences of Glyma06g27880

Limit To All Plant Sequences

>Glyma06g27880.1   sequence type=CDS   gene model=Glyma06g27880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCGACGAACGTGAAGGCAGAAACCATGTCTCTGATGGACAAGCGCAGCGCCTTGGAGGCTGAGATGAACTCCATCATCGCCCGCCTCTCCCAGCCCGGCGCTCCTGGCCTCTCCGGAAATCTCGTCGACTCTGAGGGTTTTCCCCGTTCCGATATCGACATCCCCGTTGTTCGAGCCGAACGACGTCGCCTGGCAGAGCTGCGCAGTGACCACAACGAAGTAACTGAGAAAATTAACCTAAATATTCAGATTCTCCATTCGGCAAGACTCGGAAATAGGTCATTGCCCTTCAAGAATTCAGGTAACGATGATGGTTCAGATACTCAGATCTCATCAAATATGGACACTGTTGCATCAACACCATCACAAAATGTCCTTCTGATACGATCTCCCAACTCAATGGATGTGAACGTGTTGATTAGTAGACCATTTGCAATGGTAGATGAGATAGCAGATGCATCACCAGCAGTAGAGGATGGTTTACAACTTGGGGATCAAATTTTGAAATTTGGCAATGTTGAAGCAGGTGATAATTTGCTCCAAAGGCTTTCTTCTGAGGCTCAGTCAAATCTGGGTTGTGCAGTACCAGTTGTTATTATGAGGCAAGGCACAGTGATCAACTTAACTATTACACCTAGACCTTGGCAAGGCAGAGGACTATTGGGATGCCATTTTCGGATCTTGTAG

>Glyma06g27880.2   sequence type=CDS   gene model=Glyma06g27880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCGACGAACGTGAAGGCAGAAACCATGTCTCTGATGGACAAGCGCAGCGCCTTGGAGGCTGAGATGAACTCCATCATCGCCCGCCTCTCCCAGCCCGGCGCTCCTGGCCTCTCCGGAAATCTCGTCGACTCTGAGGGTTTTCCCCGTTCCGATATCGACATCCCCGTTGTTCGAGCCGAACGACGTCGCCTGGCAGAGCTGCGCAGTGACCACAACGAAGTAACTGAGAAAATTAACCTAAATATTCAGATTCTCCATTCGGCAAGACTCGGAAATAGGTCATTGCCCTTCAAGAATTCAGATACTCAGATCTCATCAAATATGGACACTGTTGCATCAACACCATCACAAAATGTCCTTCTGATACGATCTCCCAACTCAATGGATGTGAACGTGTTGATTAGTAGACCATTTGCAATGGTAGATGAGATAGCAGATGCATCACCAGCAGTAGAGGATGGTTTACAACTTGGGGATCAAATTTTGAAATTTGGCAATGTTGAAGCAGGTGATAATTTGCTCCAAAGGCTTTCTTCTGAGGCTCAGTCAAATCTGGGTTGTGCAGTACCAGTTGTTATTATGAGGCAAGGCACAGTGATCAACTTAACTATTACACCTAGACCTTGGCAAGGCAGAGGACTATTGGGATGCCATTTTCGGATCTTGTAG

Predicted protein sequences of Glyma06g27880

Limit To All Plant Sequences

>Glyma06g27880.1   sequence type=predicted peptide   gene model=Glyma06g27880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVATNVKAETMSLMDKRSALEAEMNSIIARLSQPGAPGLSGNLVDSEGFPRSDIDIPVVRAERRRLAELRSDHNEVTEKINLNIQILHSARLGNRSLPFKNSGNDDGSDTQISSNMDTVASTPSQNVLLIRSPNSMDVNVLISRPFAMVDEIADASPAVEDGLQLGDQILKFGNVEAGDNLLQRLSSEAQSNLGCAVPVVIMRQGTVINLTITPRPWQGRGLLGCHFRIL*

>Glyma06g27880.2   sequence type=predicted peptide   gene model=Glyma06g27880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVATNVKAETMSLMDKRSALEAEMNSIIARLSQPGAPGLSGNLVDSEGFPRSDIDIPVVRAERRRLAELRSDHNEVTEKINLNIQILHSARLGNRSLPFKNSDTQISSNMDTVASTPSQNVLLIRSPNSMDVNVLISRPFAMVDEIADASPAVEDGLQLGDQILKFGNVEAGDNLLQRLSSEAQSNLGCAVPVVIMRQGTVINLTITPRPWQGRGLLGCHFRIL*

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