SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G57950 | AT | Annotation by Michelle Graham. TAIR10: 26S proteasome regulatory subunit, putative | chr5:23460765-23462128 FORWARD LENGTH=227 | SoyBase | E_val: 1.00E-96 | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0043248 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome assembly | SoyBase | N/A | ISS |
| GO:0051510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0005838 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle | SoyBase | N/A | ISS |
| KOG3129 | KOG | 26S proteasome regulatory complex, subunit PSMD9 | JGI | ISS | |
| PTHR12651 | Panther | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 9 | JGI | ISS | |
| UniRef100_I1KDD8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDD8_SOYBN | SoyBase | E_val: 2.00E-163 | ISS |
| UniRef100_Q8LAJ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome non-ATPase regulatory subunit 9 n=1 Tax=Arabidopsis thaliana RepID=Q8LAJ4_ARATH | SoyBase | E_val: 5.00E-94 | ISS |
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Glyma06g27660 not represented in the dataset |
Glyma06g27660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g219400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g27660.2 sequence type=transcript gene model=Glyma06g27660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCGGAATTTAAGTATTTACAAAAAATAAAAAATAGAGTACGAGAATAGTCCACTAGGTCGACGGAGAAGCTGTGCGCCACCATTCCATTCCATTCCAGTAAGCATAATACAGTGTGAACAGAGTAAATCAGTAAAATACAACATACAGTCTATCATAGTCAGAATTGAGAACAATCGTTGGTGTGGAACGTGACAATGGTGGCGACGAACGTGAAGGCAGAAACCATGTCTCTGATGGACAAGCGCAGCGCCTTGGAGGCTGAGATGAACTCCATCATCGCCCGCCTCTCCCAGCCAGGCGCTCCTGGCCTCTCCGGAAATCTCGTCGATTCCGAGGATTTTCCCCATTCCGATATCGACGTCCCCGTTGTTCGAGCCGAACGACGTCGCCTGGCAGAGCTGCGCAGCGACCACAACGAAGTAACTGATAAAATTAACCTAAATATTCAGATTCTCCATTCGGCAAGACTCGGAAATAGGTCATTCAAGAATTCAGATACTCAGGTCTCATCAAATATGGACACTGTTGCATCAACACCGTCACAAAATGTCCTTCTGATACGATCTCCCAACTCTATGGATGTGAATGTGTTGATTAGTAGACCATTTGCAATGGTAGACGAGATAGCAGATGCATCACCAGCAGTAGAGGATGGTTTACAACTTGGGGATCAAATTTTGAAATTTGGCAATGTGGAAGCAGGTGATAATTTGCTCCAAAGGCTTTCTTCCGAGGCTCAGTCAAATCTGGGTTGTGCAGTACCAGTTGTTATTATGAGGCAAGGCACAGTAATCAACTTAACTATTACACCTAGACCTTGGCAAGCTAGAGGACTATTGGGATGTCATTTTCGGATCTTGTAGGTGCCATGAACTAATTTTTCACATGATGGTGGTCACGGTTTTTCCTTTTGATGCATTTCCCACCCGGAGTTCTTTACCTTATGATATTCATCTTGGCAAGACTCTATATATGTAATAGATAATTACATTACAGCCGACCTTCTTTGATTGTGGTGCACTTTCTTTGACTCAATAATGTGTTACGCTTTTTCTGATCATTTTTCTTTTAAAACGCAAAGTAATTTTAGATATCATAATGGTAAATTTATGTCAAGATTCCTTGCATATGAACTGCATTCATAAGCTTATGTAGCTTTCTCGAGACAGAAAGTGATGGGCTCGGGCACATACTGGTTATGGATCATTTCATGCACGTGACTGTGTAATGTGAAAATTCCCTCTCATTTCATAGAA
>Glyma06g27660.1 sequence type=CDS gene model=Glyma06g27660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGCGACGAACGTGAAGGCAGAAACCATGTCTCTGATGGACAAGCGCAGCGCCTTGGAGGCTGAGATGAACTCCATCATCGCCCGCCTCTCCCAGCCAGGCGCTCCTGGCCTCTCCGGAAATCTCGTCGATTCCGAGGATTTTCCCCATTCCGATATCGACGTCCCCGTTGTTCGAGCCGAACGACGTCGCCTGGCAGAGCTGCGCAGCGACCACAACGAAGTAACTGATAAAATTAACCTAAATATTCAGATTCTCCATTCGGCAAGACTCGGAAATAGGTCATTCAAGAATTCAGGTAATGATGATGGTTCAGATACTCAGGTCTCATCAAATATGGACACTGTTGCATCAACACCGTCACAAAATGTCCTTCTGATACGATCTCCCAACTCTATGGATGTGAATGTGTTGATTAGTAGACCATTTGCAATGGTAGACGAGATAGCAGATGCATCACCAGCAGTAGAGGATGGTTTACAACTTGGGGATCAAATTTTGAAATTTGGCAATGTGGAAGCAGGTGATAATTTGCTCCAAAGGCTTTCTTCCGAGGCTCAGTCAAATCTGGGTTGTGCAGTACCAGTTGTTATTATGAGGCAAGGCACAGTAATCAACTTAACTATTACACCTAGACCTTGGCAAGCTAGAGGACTATTGGGATGTCATTTTCGGATCTTGTAG >Glyma06g27660.2 sequence type=CDS gene model=Glyma06g27660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGCGACGAACGTGAAGGCAGAAACCATGTCTCTGATGGACAAGCGCAGCGCCTTGGAGGCTGAGATGAACTCCATCATCGCCCGCCTCTCCCAGCCAGGCGCTCCTGGCCTCTCCGGAAATCTCGTCGATTCCGAGGATTTTCCCCATTCCGATATCGACGTCCCCGTTGTTCGAGCCGAACGACGTCGCCTGGCAGAGCTGCGCAGCGACCACAACGAAGTAACTGATAAAATTAACCTAAATATTCAGATTCTCCATTCGGCAAGACTCGGAAATAGGTCATTCAAGAATTCAGATACTCAGGTCTCATCAAATATGGACACTGTTGCATCAACACCGTCACAAAATGTCCTTCTGATACGATCTCCCAACTCTATGGATGTGAATGTGTTGATTAGTAGACCATTTGCAATGGTAGACGAGATAGCAGATGCATCACCAGCAGTAGAGGATGGTTTACAACTTGGGGATCAAATTTTGAAATTTGGCAATGTGGAAGCAGGTGATAATTTGCTCCAAAGGCTTTCTTCCGAGGCTCAGTCAAATCTGGGTTGTGCAGTACCAGTTGTTATTATGAGGCAAGGCACAGTAATCAACTTAACTATTACACCTAGACCTTGGCAAGCTAGAGGACTATTGGGATGTCATTTTCGGATCTTGTAG
>Glyma06g27660.1 sequence type=predicted peptide gene model=Glyma06g27660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVATNVKAETMSLMDKRSALEAEMNSIIARLSQPGAPGLSGNLVDSEDFPHSDIDVPVVRAERRRLAELRSDHNEVTDKINLNIQILHSARLGNRSFKNSGNDDGSDTQVSSNMDTVASTPSQNVLLIRSPNSMDVNVLISRPFAMVDEIADASPAVEDGLQLGDQILKFGNVEAGDNLLQRLSSEAQSNLGCAVPVVIMRQGTVINLTITPRPWQARGLLGCHFRIL* >Glyma06g27660.2 sequence type=predicted peptide gene model=Glyma06g27660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVATNVKAETMSLMDKRSALEAEMNSIIARLSQPGAPGLSGNLVDSEDFPHSDIDVPVVRAERRRLAELRSDHNEVTDKINLNIQILHSARLGNRSFKNSDTQVSSNMDTVASTPSQNVLLIRSPNSMDVNVLISRPFAMVDEIADASPAVEDGLQLGDQILKFGNVEAGDNLLQRLSSEAQSNLGCAVPVVIMRQGTVINLTITPRPWQARGLLGCHFRIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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