SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G58000 | AT | Annotation by Michelle Graham. TAIR10: Reticulon family protein | chr5:23477416-23479496 FORWARD LENGTH=487 | SoyBase | E_val: 3.00E-102 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| PTHR10994 | Panther | RETICULON/NOGO | JGI | ISS | |
| PTHR10994:SF43 | Panther | UNKNOWN PROTEIN | JGI | ISS | |
| PF02453 | PFAM | Reticulon | JGI | ISS | |
| UniRef100_Q56X72 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Reticulon-like protein B21 n=1 Tax=Arabidopsis thaliana RepID=RTNLS_ARATH | SoyBase | E_val: 1.00E-99 | ISS |
| UniRef100_UPI0002339E3A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339E3A related cluster n=1 Tax=unknown RepID=UPI0002339E3A | SoyBase | E_val: 0 | ISS |
|
Glyma06g26810 not represented in the dataset |
Glyma06g26810 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g221600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g26810.1 sequence type=CDS gene model=Glyma06g26810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCCATTTGAGTACTGATTGCCAGGTAGAAAGGAGGGTAGAAAAAGAAGATAAATTGGGGATGGAAGTGGGGGAAAAGAGGGTAGGGGTTAGAGGGAGTGTGGTTGCAGCAGGGTCAGTGTGGGAGAGCAGGATGAAGAGTGATGAAGTTAGAGGGGGGATCAAGGTGTTCAATGCAGAAGAAAACCCTGAAGAAAATAGTGGTGCCAAATTGAAAAGAAATCCAATTGGATGTGGAAAGAGGAAAACATGGAAATCAGAGAGTTCTGAGGGGTCAGAAAATAATACTCATAATAATAGTTGTAATAGTAAGATCCCAATTCAGTGTAAGGAGCTGAGCAATTCTTGTTCCTCTGATGGAATCAAGAAGAGCCCAATTCACACCAGAAAGATTGCTGCTTTTGGAGATAAGTTTGAGAGAGGTCCAATTCATACCAGAAAGATGAGATCTGAGGCACACAAGAGTGGTGAATTGGATGAGGGGAATGAGAGGACTTCAGCACAATTGAGGAAGACGAAGTCAGATTCAATCTCCAAGAAGAAGACTGCTTCTTCTTCTGGTGGCAGATCAATTCAGTTGAGGAAGACCAAATCCGAAGCAACGGATCAAAAGATTGAGGTTGAGAATGGGAAGAATGATGATGAAAATTGTGTGGATTTGGATTATTTGTGTCAAGAGAAAGTGATTTCTAGTAGCTCGGATAATGTGGCTCAAGGTTGTTCAACAGAATTGTCGGTTGATGCTGCTGCTGCTGCTGATGTTGATGTTGTTGCTGTTGCTGATGAAGAAGAGGAAGAGGAGGTTGAGATTGAGATGGTGAAGGAAATTAGTATTCCAGAATACAAGGTTGAGGTTGCTGTGAAGGAACCAGAAAGTAATGATGAGGTTGTTGTTGTTGAGAATGAACAAGGCAAGAAGGTTGTTGTGAATGAACCAGAAAAGAAGGTGGTGGTTGTGGTTGTGAATGAGCAAGAACCTACGAAGATTCTGAAGGAACAAGAACCTAAGAAGATTCTGAATGAACCAGAACCTAAGAGGGTTGTGAGTGCCCACATGCGATTTCATCACAGAAATGAAAGAAAGCCAATTTCTGTCCCTCTTGCTATGAAGCAATCTCCAACAATTAGAAGGAACTCCACAAGTCACCAAAATTTCTCCAAAACTAACTCAATTCCAAAAGCAACAACAGAACATCGCTGCTTTCCACAAACCCAAAGCAAGTTGCAGAGTCTAGTGGAATTAATCATGTGGAGAGATGTTTCAAGATCAGCATTTGTGTTTGGATTTGGATCATTCATCATAGTCTCATCTTCTTATGCAAAGGATATCAATCTAAGTATTATTTCAGTGATGTCCTATATAAGTCTTGTTTATCTCGCTGTTATCTTCCTATATAGATCCTTAATTTGCAGGGGGATCATAAACGTTGAGGACTCAAATTATGTTGTGGGAGAAGAAGATGCAATTTGGATGCTAAAATTAATCCTCCCTTACTTGAATGAGTTCCTATCAAAACTCAAAGCCTTGTTTTCTGGAGATCCAGGTACCACAATAAAGTTGGCAGTGTTGCTCTTTGTTTTGGCCAGATGTGGCAGCTACATAACCGTTTGGAAGATGGCCAAATTTGGCTTCTTTGGAGTTTTTACTGTACCAAAGATATGCTCTTCGTATTCTGCACAGTTAACTGAATATGGAAATTTTTGGATTCGTCGATTCCGGGATGCATGGGATTCATGCACTCACAAGAAAGCCGTGGCTCTTGGCATCTTCGGGCTTGTATGGAATTTATCATCAGTTGTTGCTCGCATTTGGGCAGTGTTCGTACTATTTGCAGCCTTCAGATATTATCAACAACATTATTTGGTGAGAGATGAATGGGGGGAAGATGAAGCAGGATGTGATGAAACATGGCAAGACCCTGTTGGAGTTAGACCGAAACAAGGACCTGCAACCAACTTTAGTGATACCAATAAAATAAAGAAAGGGTTCTAA
>Glyma06g26810.1 sequence type=predicted peptide gene model=Glyma06g26810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTHLSTDCQVERRVEKEDKLGMEVGEKRVGVRGSVVAAGSVWESRMKSDEVRGGIKVFNAEENPEENSGAKLKRNPIGCGKRKTWKSESSEGSENNTHNNSCNSKIPIQCKELSNSCSSDGIKKSPIHTRKIAAFGDKFERGPIHTRKMRSEAHKSGELDEGNERTSAQLRKTKSDSISKKKTASSSGGRSIQLRKTKSEATDQKIEVENGKNDDENCVDLDYLCQEKVISSSSDNVAQGCSTELSVDAAAAADVDVVAVADEEEEEEVEIEMVKEISIPEYKVEVAVKEPESNDEVVVVENEQGKKVVVNEPEKKVVVVVVNEQEPTKILKEQEPKKILNEPEPKRVVSAHMRFHHRNERKPISVPLAMKQSPTIRRNSTSHQNFSKTNSIPKATTEHRCFPQTQSKLQSLVELIMWRDVSRSAFVFGFGSFIIVSSSYAKDINLSIISVMSYISLVYLAVIFLYRSLICRGIINVEDSNYVVGEEDAIWMLKLILPYLNEFLSKLKALFSGDPGTTIKLAVLLFVLARCGSYITVWKMAKFGFFGVFTVPKICSSYSAQLTEYGNFWIRRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFAAFRYYQQHYLVRDEWGEDEAGCDETWQDPVGVRPKQGPATNFSDTNKIKKGF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
